Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | minE | 2,253,578 | 2 bp→AA | coding (3459‑3460/4224 nt) | rpoC ← | RNA polymerase, beta prime subunit |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 2,253,578 | 0 | C | A | 100.0% | 221.5 / NA | 61 | A1154S (GCA→TCG) | rpoC | RNA polymerase, beta prime subunit |
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (61/0); total (61/0) | |||||||||||
* | minE | 2,253,579 | 0 | C | A | 100.0% | 221.7 / NA | 61 | P1153P (CCG→CCT) | rpoC | RNA polymerase, beta prime subunit |
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (61/0); total (61/0) |
TACCGAAGGAAACGATACCGCTGATTTCAGCCAGGATTGCCGGCTCTTTCGGACGACGTGCTTC > minE/2253539‑2253602 || tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:618349/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:315837/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:384778/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:392956/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:396522/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:396910/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:428933/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:431962/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:451844/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:467668/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:472472/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:55589/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:558322/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:559354/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:593106/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:605391/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:290362/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:640523/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:653288/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:67096/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:680994/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:731581/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:743374/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:819831/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:873065/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:878326/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:892227/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:91131/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:912268/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:949058/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:954339/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1231019/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1017900/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1022366/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1041474/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1078902/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:10838/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1085533/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1088186/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1094653/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:111140/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1156343/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1182564/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1183463/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1204153/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1010463/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1241988/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1331018/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1383415/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1412981/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1425247/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:146027/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1476340/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1548965/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:1556410/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:178938/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:191380/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:19999/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:202026/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGCTGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:282096/3‑64 (MQ=255) tgccGAAGGAGATGGTGCCGATGATTTCCGCCAGGATCGAAGGCTCTTTCGGACGACGAGCCTc > 1:116/3‑64 (MQ=255) || TACCGAAGGAAACGATACCGCTGATTTCAGCCAGGATTGCCGGCTCTTTCGGACGACGTGCTTC > minE/2253539‑2253602 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |