Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | minE | 2,662,081 | 2 bp→AA | coding (747‑748/1599 nt) | rtcR ← | sigma 54‑dependent transcriptional regulator of rtcBA expression |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 2,662,081 | 0 | G | A | 100.0% | 165.6 / NA | 46 | L250L (CTG→TTG) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (46/0); total (46/0) | |||||||||||
* | minE | 2,662,082 | 0 | G | A | 100.0% | 165.7 / NA | 46 | T249T (ACC→ACT) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (46/0); total (46/0) |
AACGCGCCTTTTACATGACCAAACAGCGTCGACATGGCGGTATCGCCGCGCAGGGTGGCGCAGTTCACTTC > minE/2662029‑2662099 || aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:771791/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:339710/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:35175/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:404357/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:404535/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:453722/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:455975/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:555926/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:650201/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:694692/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:730647/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:757236/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:283715/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:809739/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:824738/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:863554/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:864989/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:888574/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:898025/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:913595/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:924173/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:974876/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:997048/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1431963/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1086725/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1110253/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1131188/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1285323/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1288228/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1324965/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1342221/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1342859/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1361041/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1366329/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1417682/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1006492/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1446799/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1487482/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1542430/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:1547943/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:188011/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:195811/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:213257/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:227824/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:240710/4‑71 (MQ=255) aaggcgcCCTTGACGTGACCGAACAGTGCCGACATCGCGCCGTCGCCGCGCAAAGTGGCGCAGTTGACCTc > 1:274650/4‑71 (MQ=255) || AACGCGCCTTTTACATGACCAAACAGCGTCGACATGGCGGTATCGCCGCGCAGGGTGGCGCAGTTCACTTC > minE/2662029‑2662099 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |