New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | minE | = 2530303 | 66 (1.060) | 4 (0.070) | 3/112 | 5.7 | 6.3% | intergenic (+78/‑20) | rpmG/mutM | 50S ribosomal subunit protein L33/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase |
? | minE | = 2530315 | 59 (1.050) | intergenic (+90/‑8) | rpmG/mutM | 50S ribosomal subunit protein L33/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
TGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTATCTGCTTGCCCCCATATTGACTGCATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2530235‑2530303 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatctCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGG < minE/2530315‑2530250 TGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTATCTGCTTGCCCCCATATTGACTGCA > 1:525949/1‑66 CTCGCTCCGGCGGGGTTTTTTGTTATCTGCTTGCCCCCATATTGACTGCATCTCCAGGAATGAACAGATGC < 1:733881/71‑1 TTTTTTGTTATCTGCTTGCCCCCATATTGACTGCAT < 1:613679/36‑1 TTGTTATCTGCTTGCCCCCATATTGACTGCATCTCCAGGAATGAAC < 1:2963092/46‑1 GTTATCTGCTTGCCCCCATATTGACTGCATCTCCAGGAATGAACAG > 1:1285243/1‑46 TGCTTGCCCCCATATTGACTGCATCTCCAGGAATGAACAGATGC < 1:2144456/44‑1 CATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGG > 1:604633/1‑71 ATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAG > 1:2543555/1‑69 ATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAA > 1:2554408/1‑54 TCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAG < 1:2787364/37‑1 TGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTATCTGCTTGCCCCCATATTGACTGCATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2530235‑2530303 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatctCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGCGAGG < minE/2530315‑2530250 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |