| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | minE | 1,439,412 | G→A | A297V (GCT→GTT) | ompC ← | outer membrane porin protein C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,439,412 | 0 | G | A | 98.0% | 139.4 / ‑3.8 | 49 | A297V (GCT→GTT) | ompC | outer membrane porin protein C |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (27/21); total (28/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
CATATTTCAGGATATCTTCGTCGTCGTAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTT > minE/1439347‑1439479 | catATTTCAGGATATCTTCGTCGTCGTAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAAGCAgg > 1:628188/1‑71 (MQ=255)catATTTCAGGATATCTTCGTCGTCGTAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAgg > 1:1518028/1‑71 (MQ=255) atatTTCAGGATATCTTCGTCGTCGTAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAggg < 1:2978304/71‑1 (MQ=255) tatTTCAGGATATCTTCGTCGTCGTAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGgga > 1:2591285/1‑71 (MQ=255) tttCAGGATATCTTCGTCGTCGTAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGggacg > 1:595507/1‑71 (MQ=255) tttCAGGATATCTTCGTCGTCGTAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGggac < 1:2949977/70‑1 (MQ=255) ttCAGGATATCTTCGTCGTCGTAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGggacg < 1:2876370/70‑1 (MQ=255) ttCAGGATATCTTCGTCGTCGTAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGggacg > 1:1740517/1‑70 (MQ=255) tCTTCGTCGTCGTAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGAcc > 1:2698284/1‑71 (MQ=255) cgtcgtcgtAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGaa < 1:1058503/70‑1 (MQ=255) cgtcgtcgtAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGaa < 1:2874952/70‑1 (MQ=255) cgtcgtcgtAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAg > 1:2768243/1‑71 (MQ=255) gtcgtAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCa > 1:2475644/1‑47 (MQ=255) gtcgtAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCg < 1:567221/70‑1 (MQ=255) gtAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGaa > 1:2063022/1‑63 (MQ=255) gtAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAAc < 1:730256/70‑1 (MQ=255) gtAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACt > 1:2486891/1‑71 (MQ=255) tAGCCACGACCCAGGTTTTTACCTTTAGACTGCGGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTg > 1:995488/1‑71 (MQ=255) ccACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTa > 1:521612/1‑71 (MQ=255) aCGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAg < 1:222993/58‑1 (MQ=255) aCGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACt < 1:2621431/71‑1 (MQ=255) cGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACt > 1:737793/1‑70 (MQ=255) cGACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACt > 1:2206326/1‑70 (MQ=255) gACCCAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACt > 1:8592/1‑69 (MQ=255) cccAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGc < 1:1451835/71‑1 (MQ=255) cccAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGc < 1:1256761/71‑1 (MQ=255) ccAGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGa < 1:3002875/68‑1 (MQ=255) aGGTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGAGGCAGACCGAAGTCGAACTGGTACTGAGCAAc < 1:1541436/71‑1 (MQ=255) gTTTTTACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGa < 1:1838022/64‑1 (MQ=255) ttttACCTTTAGACTGCAGGTAAGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCt > 1:231201/1‑71 (MQ=255) tttACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCtt > 1:721988/1‑71 (MQ=255) ttACCTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTc > 1:2928643/1‑71 (MQ=255) cTTTAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACt < 1:1277669/54‑1 (MQ=255) ttAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGtt > 1:786308/1‑71 (MQ=255) tAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTa > 1:2083913/1‑49 (MQ=255) tAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCt > 1:306525/1‑62 (MQ=255) tAGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTc > 1:2013988/1‑71 (MQ=255) aGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTg > 1:1979314/1‑45 (MQ=255) aGACTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTc < 1:2280021/70‑1 (MQ=255) aCTGCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCtg < 1:1011433/70‑1 (MQ=255) gCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAAc > 1:1818440/1‑38 (MQ=255) gCAGGTAAACCAGGGACGGACGCAGACCGAAGTCGAAc > 1:2247296/1‑38 (MQ=255) aGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCtgt > 1:2570995/1‑66 (MQ=255) aGGTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCttt < 1:1745103/71‑1 (MQ=255) ggTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTg < 1:1396778/71‑1 (MQ=255) ggTAAACCAGGGACGGACGAAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCttt > 1:981714/1‑70 (MQ=255) gTAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACa < 1:3048001/49‑1 (MQ=255) tAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACa < 1:2811679/48‑1 (MQ=255) tAAACCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGtt > 1:407747/1‑71 (MQ=255) | CATATTTCAGGATATCTTCGTCGTCGTAGCCACGACCCAGGTTTTTACCTTTAGACTGCAGGTAAGCCAGGGACGGACGCAGACCGAAGTCGAACTGGTACTGAGCAACAGCTTCGAAGTTCTGTGCTTTGTT > minE/1439347‑1439479 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |