Predicted mutation
evidence seq id position mutation annotation gene description
RA minE 2,516,656 C→T A102T (GCT→ACT)  trmH ← tRNA (Guanosine‑2'‑O‑)‑methyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,516,6560CT100.0% 292.7 / NA 98A102T (GCT→ACT) trmHtRNA (Guanosine‑2'‑O‑)‑methyltransferase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (48/50);  total (48/50)

CCCGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGCGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCATCGCC  >  minE/2516589‑2516722
                                                                   |                                                                  
cccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGtt                                                                 <  1:1879730/71‑1 (MQ=255)
 ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa                                                                <  1:678185/71‑1 (MQ=255)
   gTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTAt                                                               >  1:1022701/1‑70 (MQ=255)
    ttttCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTAt                                                               >  1:1391794/1‑69 (MQ=255)
      ttCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAg                                                            >  1:2250293/1‑70 (MQ=255)
      ttCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAg                                                            >  1:1237140/1‑70 (MQ=255)
        ctcCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGa                                                           >  1:376091/1‑69 (MQ=255)
           cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGaaa                                                         <  1:2332451/68‑1 (MQ=255)
             gTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATgg                                                    >  1:2705856/1‑71 (MQ=255)
              tCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGa                                                           <  1:955956/63‑1 (MQ=255)
              tCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATggg                                                   <  1:480157/71‑1 (MQ=255)
              tCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATggg                                                   >  1:1656012/1‑71 (MQ=255)
              tCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATAAGAAAGATggg                                                   <  1:202188/71‑1 (MQ=255)
              tCCCATCAAAATGCAGGTCGG‑‑GAGTGTAATCAATTTCGCTGAAATCGACAGTGTTATCAGAAAGATggg                                                   <  1:1961618/69‑1 (MQ=255)
               cccATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGt                                                  >  1:1642344/1‑71 (MQ=255)
                ccATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGt                                                  <  1:2700333/70‑1 (MQ=255)
                ccATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGt                                                  <  1:2863369/70‑1 (MQ=255)
                  aTCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc                                               <  1:1700189/71‑1 (MQ=255)
                   tCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGa                                                           <  1:2201360/58‑1 (MQ=255)
                   tCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc                                               >  1:538536/1‑70 (MQ=255)
                   tCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc                                               >  1:2998645/1‑70 (MQ=255)
                    cAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc                                               >  1:111516/1‑69 (MQ=255)
                     aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa                                                                >  1:2783842/1‑51 (MQ=255)
                     aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa                                                                >  1:207352/1‑51 (MQ=255)
                     aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc                                               >  1:1817343/1‑68 (MQ=255)
                     aaaaGGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc                                               >  1:2323026/1‑68 (MQ=255)
                      aaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTAt                                                               <  1:780241/51‑1 (MQ=255)
                       aaTGCAGGTCGGTCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGaa                                          <  1:1528611/71‑1 (MQ=255)
                        aTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAAt                                         <  1:1657412/71‑1 (MQ=255)
                        aTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAAt                                         <  1:2137617/71‑1 (MQ=255)
                          gCAGGTCGGGCGAGTGTAATCAATTTCTCGGAAATCGACAGTGTTAt                                                               <  1:2930330/47‑1 (MQ=255)
                           cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt                                       <  1:2286286/70‑1 (MQ=255)
                           cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg                                      >  1:1021180/1‑71 (MQ=255)
                           cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg                                      >  1:136631/1‑71 (MQ=255)
                           cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg                                      <  1:2958931/71‑1 (MQ=255)
                              gTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGtt                                                                 >  1:1371266/1‑41 (MQ=255)
                              gTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGtt                                                                 >  1:1945910/1‑41 (MQ=255)
                              gTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGaaa                                                         <  1:2917274/49‑1 (MQ=255)
                              gTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATg                                                     <  1:1667068/53‑1 (MQ=255)
                              gTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGc                                     <  1:1494616/69‑1 (MQ=255)
                              gTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCAt                                   >  1:254666/1‑71 (MQ=255)
                               tCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATgg                                                    >  1:562229/1‑53 (MQ=255)
                                cGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAg                                                        >  1:2214802/1‑48 (MQ=255)
                                 gggCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGc                                 <  1:1833152/70‑1 (MQ=255)
                                    cGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGaaa                                                         <  1:2095566/43‑1 (MQ=255)
                                     gAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTgg                            >  1:94868/1‑71 (MQ=255)
                                     gAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTgg                            <  1:848804/71‑1 (MQ=255)
                                      aGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCa                                    >  1:1348909/1‑62 (MQ=255)
                                       gtgtAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc                                               >  1:2234984/1‑50 (MQ=255)
                                        tgtAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCt                         <  1:111473/71‑1 (MQ=255)
                                          tAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGcc                                >  1:862147/1‑62 (MQ=255)
                                          tAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCttt                       >  1:1776405/1‑71 (MQ=255)
                                          tAATCAATTTCGAGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGcc                                >  1:85888/1‑62 (MQ=255)
                                           aaTCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGa                                           <  1:47183/50‑1 (MQ=255)
                                           aaTCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCttt                       >  1:97922/1‑70 (MQ=255)
                                           aaTCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCttt                       >  1:2564506/1‑70 (MQ=255)
                                            aTCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTg                      <  1:1904333/70‑1 (MQ=255)
                                            aTCAATTTCGCGGAAATCGACAGTGGTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTg                      <  1:45384/70‑1 (MQ=255)
                                             tCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg                                      <  1:717202/53‑1 (MQ=255)
                                             tCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTgg                            >  1:2195875/1‑63 (MQ=255)
                                             tCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTgg                            >  1:2741098/1‑63 (MQ=255)
                                             tCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTgag                    <  1:1509351/71‑1 (MQ=255)
                                               aaTTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGc                           >  1:1556230/1‑62 (MQ=255)
                                                aTTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCt                         <  1:1711577/63‑1 (MQ=255)
                                                 tttCGCGGAAATCGACAGTGTTATCAGAAAGATggg                                                   <  1:208960/36‑1 (MQ=255)
                                                 tttCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCttt                       <  1:434564/64‑1 (MQ=255)
                                                 tttCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGAt                  >  1:1667106/1‑69 (MQ=255)
                                                 tttCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGAt                  >  1:1670578/1‑69 (MQ=255)
                                                      cgGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGTCCTTTGAGATGAGCGAc           >  1:146207/1‑71 (MQ=255)
                                                      cgGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGAc           <  1:2972842/71‑1 (MQ=255)
                                                      cgGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGAc           <  1:1294728/71‑1 (MQ=255)
                                                       ggAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTg                      <  1:1908181/59‑1 (MQ=255)
                                                       ggAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATg                 <  1:715903/64‑1 (MQ=255)
                                                        gAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTg                             <  1:2086252/51‑1 (MQ=255)
                                                        gAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTga                     <  1:1226416/59‑1 (MQ=255)
                                                         aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg                                      <  1:2652752/41‑1 (MQ=255)
                                                         aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACgg         >  1:922189/1‑70 (MQ=255)
                                                         aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACgg         >  1:1557295/1‑70 (MQ=255)
                                                          aaTCGAGAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg                                      <  1:102991/40‑1 (MQ=38)
                                                          aaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCGTGGcc                          <  1:978032/52‑1 (MQ=255)
                                                          aaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCa       <  1:1459859/71‑1 (MQ=255)
                                                          aaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCa       >  1:417316/1‑71 (MQ=255)
                                                           aTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTg                             <  1:1135080/48‑1 (MQ=255)
                                                           aTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACg          >  1:3021571/1‑67 (MQ=255)
                                                           aTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCAt      >  1:516616/1‑71 (MQ=255)
                                                           aTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCAt      >  1:1303410/1‑71 (MQ=255)
                                                           aTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCAt      >  1:1092146/1‑71 (MQ=255)
                                                             cGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCATCg    >  1:335962/1‑71 (MQ=255)
                                                              gACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCATCg    <  1:1403798/70‑1 (MQ=255)
                                                              gACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCATCg    >  1:429505/1‑70 (MQ=255)
                                                              gACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCATCGc   >  1:2903989/1‑71 (MQ=255)
                                                              gACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCATCGc   <  1:2149195/71‑1 (MQ=255)
                                                              gACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCATCGc   >  1:118379/1‑71 (MQ=255)
                                                              gACAGTGTTATCAGAAAGATGGGTCGCCAGAATCTGCATGCCCTGGCCTTTGAGAGGAGCGa            <  1:2559795/62‑1 (MQ=255)
                                                               aCAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCATCGcc  <  1:645935/71‑1 (MQ=255)
                                                               aCAGTGTTATCAGAAAGATCGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCATCGcc  <  1:2358114/71‑1 (MQ=255)
                                                                cAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTg                             >  1:485096/1‑43 (MQ=255)
                                                                cAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCATCGcc  <  1:643210/70‑1 (MQ=255)
                                                                   |                                                                  
CCCGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGCGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCATCGCC  >  minE/2516589‑2516722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: