| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,097,163 | Δ2 bp | 100% | coding (399‑400/1113 nt) | ydiK → | predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,097,163 | 0 | G | . | 100.0% | 11.5 / NA | 4 | coding (399/1113 nt) | ydiK | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (0/4); total (0/4) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| * | minE | 1,097,164 | 0 | G | . | 100.0% | 11.5 / NA | 4 | coding (400/1113 nt) | ydiK | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (0/4); total (0/4) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
AAGCTGTATGCAGGCTGGCACAACTTGCTGGATATGGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGC > minE/1097128‑1097230 || aaGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCt < 1:1648687/67‑1 (MQ=255)aaGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCt < 1:1693937/67‑1 (MQ=255)aaGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCt < 1:23778/67‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCt < 1:1507177/66‑1 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTatat > 1:648626/1‑38 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTATAtt > 1:1066275/1‑39 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGc > 1:1253491/1‑42 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc > 1:1710935/1‑67 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc > 1:626171/1‑67 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc > 1:499159/1‑67 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc > 1:34681/1‑67 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc > 1:322442/1‑67 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc > 1:2308382/1‑67 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc > 1:2232513/1‑67 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc > 1:1930747/1‑67 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc > 1:1058119/1‑67 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc > 1:1344857/1‑67 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc > 1:1069931/1‑67 (MQ=255) ggggggACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc > 1:105907/1‑67 (MQ=255) || AAGCTGTATGCAGGCTGGCACAACTTGCTGGATATGGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGC > minE/1097128‑1097230 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |