| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 259,496:1 | +T | 100% | intergenic (+75/+102) | yajD → / ← tsx | conserved hypothetical protein/nucleoside channel, receptor of phage T6 and colicin K |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 259,496 | 1 | . | T | 100.0% | 73.2 / NA | 23 | intergenic (+75/+102) | yajD/tsx | conserved hypothetical protein/nucleoside channel, receptor of phage T6 and colicin K |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (0/23); total (0/23) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGC‑TTTTGTTGGCCGGACAAAGCG > minE/259452‑259517 | cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:2109999/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:930421/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:886630/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:877062/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:836041/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:738441/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:650312/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:56018/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:45104/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:2274818/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:2185400/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:1049222/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:1972085/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:1971344/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:1757414/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:1578379/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:1571131/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:154969/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:1499507/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:1321411/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:1203671/67‑1 (MQ=255)cTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:1071293/67‑1 (MQ=255) ttATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGCTTTTTGTTGGCCGGACAAAGCg < 1:806084/66‑1 (MQ=255) | CTTATCAGGCCTACGTTATTTCAGCAATATATTGAATTTACGTGC‑TTTTGTTGGCCGGACAAAGCG > minE/259452‑259517 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |