Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1317855	1317862	8	30 [1]	[0] 3	cld	regulator of length of O‑antigen component of lipopolysaccharide chains

ATCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGCTTAATCA  >  minE/1317788‑1317861                                                                   |        atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTGATGc         <  1:298160/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:2093844/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:686294/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:671131/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:38639/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:307276/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:268034/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:2284628/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:754195/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:858080/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:2121584/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:1978208/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:1876526/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:1747507/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:1325970/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:1263422/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:1235129/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:1208853/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:861996/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:1048383/67‑1 (MQ=255) atCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGGCGCCTCATGc         <  1:1224951/67‑1 (MQ=255) atCCACCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGGCGCCTCATGc         <  1:524281/67‑1 (MQ=255)  tCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:1627977/66‑1 (MQ=255)  tCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:1450748/66‑1 (MQ=255)  tCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:2144705/66‑1 (MQ=255)  tCCAGCAGGTTTTGACGAGTCTGATAGTAGTCTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:2136605/66‑1 (MQ=255)        agGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGCTTAatca  <  1:1170742/67‑1 (MQ=255)                  gAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:2126661/50‑1 (MQ=255)                  gAGTCTGATAGTAGTCTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:2133880/50‑1 (MQ=255)                         aTAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGc         <  1:1207877/43‑1 (MQ=255)                                                                   |        ATCCAGCAGGTTTTGACGAGTCTGATAGTAGTTTGGCGAGAACACCAACGGACGGGTCGCCTCATGCTTAATCA  >  minE/1317788‑1317861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑