Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1700791	1700807	17	7 [0]	[0] 31	hcaR	DNA‑binding transcriptional regulator

CAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAAT  >  minE/1700724‑1700790                                                                   | caATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAAt  <  1:1257802/67‑1 (MQ=255) caATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAAt  <  1:1706012/67‑1 (MQ=255) caATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAAt  <  1:2069443/67‑1 (MQ=255) caATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAAt  <  1:503290/67‑1 (MQ=255) caATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAAt  <  1:582389/67‑1 (MQ=255) caATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAAt  <  1:74245/67‑1 (MQ=255) caATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCACCTTTCTTCCACGCCATCAGTAAAGCAAt  <  1:1113158/67‑1 (MQ=255)                                                                   | CAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAAT  >  minE/1700724‑1700790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑