Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2543653	2543660	8	35 [0]	[0] 10	rfaL	O‑antigen ligase

TTCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCG  >  minE/2543586‑2543652                                                                   | ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:31787/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:2154746/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:2257320/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:2282320/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:2301278/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:2311813/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:28225/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:290078/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:291805/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:2149107/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:441373/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:486147/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:502584/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:646272/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:775711/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:810609/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:971429/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1492921/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1083484/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1159258/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1190392/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1197924/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1211767/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1346186/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1024287/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1538742/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1561083/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1579709/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1598922/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1769249/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1901172/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:2042078/67‑1 (MQ=255) ttCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:2067275/67‑1 (MQ=255) ttCAGCGCCTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:318007/67‑1 (MQ=255)                   tgATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCg  <  1:1304044/49‑1 (MQ=255)                                                                   | TTCAGCGCGTGACTCTGCTGATCTAAATGAAAAAGGTGACTTTATGAATATATTTAAACCAATTTCG  >  minE/2543586‑2543652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑