Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2662029	2662032	4	34 [0]	[0] 6	rtcR	sigma 54‑dependent transcriptional regulator of rtcBA expression

ATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTA  >  minE/2661962‑2662028                                                                   | atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAGACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:2260850/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:437142/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:2281060/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:231823/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:236454/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:291827/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:330476/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:37823/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:380720/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:981022/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:458977/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:552478/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:609958/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:705669/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:786824/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:817397/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:913489/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:1022551/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:2211273/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:205268/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:1960129/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:1914652/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:1885340/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:1882770/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:1723422/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:1671572/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:1614653/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:154889/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:1441752/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:1353946/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:1238188/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:1163088/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:1108568/1‑67 (MQ=255) atcaAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTa  >  1:1070851/1‑67 (MQ=255)                                                                   | ATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTTCACGAGATTCCCGCGCCCCGGTA  >  minE/2661962‑2662028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑