Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2953027	2953171	145	2 [1]	[0] 40	rsmC	16S RNA m2G1207 methylase

ATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCT  >  minE/2953172‑2953237 |                                                                  aTCGTGGAACGGCTGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1477030/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGAc        >  1:889211/1‑60 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:634551/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:2014894/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:2132001/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:2238430/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:2296075/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:440009/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:485150/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:498199/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:554603/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:610227/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1989568/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:635914/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:71004/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:742086/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:843771/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:87789/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:936772/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:948581/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:981370/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1430614/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1015919/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1069322/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1102032/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1248209/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1309475/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1359279/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1361775/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1015712/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1431778/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1517041/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1600485/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1691765/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1717768/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1764604/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1830848/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1955147/1‑66 (MQ=255) aTCGTGGAACGGCGGGTTGCAGATGATCATATCAAAACGACCTTTCACCTCTGAAAAGACGTTGCt  >  1:1201169/1‑66 (MQ=255) aTCGTGGAACAGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCt  >  1:1102921/1‑66 (MQ=255) |                                                                  ATCGTGGAACGGCGGGTTGGAGATGATCATATCAAAACGACCTTTCACCTCGGAAAAGACGTTGCT  >  minE/2953172‑2953237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑