Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 2,148,933 | G→A | 100% | G77G (GGC→GGT) | glmM ← | phosphoglucosamine mutase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 2,148,933 | 0 | G | A | 98.0% | 162.3 / ‑4.2 | 50 | G77G (GGC→GGT) | glmM | phosphoglucosamine mutase |
Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (0/48); total (0/50) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
CCACGGCCGGTGTTGGCATCGGGCCAGTGAAGAGTGCGGAAAGGCCCGCTGCCGCCAGACCCGCTTCCAGTGC > minE/2148911‑2148983 | ccACGGCCGGTGTTGGCATCGGGCCAGTGAAGAGGGCGGAAAGGCCCGCTGCCGCCAGACCCGAtt < 1:39459/66‑1 (MQ=255) ccGGTGTTGTCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:156642/67‑1 (MQ=255) ccGGTGTTGGCATCGTACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:2175867/67‑1 (MQ=255) ccGGTGTTGGCATCGGCCCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:2067071/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCTCTTCCAGTGc < 1:2255144/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCTCTTCCAGTGc < 1:2257758/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:443772/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:2033398/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:2068817/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:2074603/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:221003/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:2224481/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:978293/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:558740/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:594793/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:605525/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:637516/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:658424/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:737137/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:775455/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:838649/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:846933/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:902597/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1012006/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1920758/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1069417/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1076534/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1133684/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1159973/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1200534/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1306052/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:133369/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1379299/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1389530/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1936157/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1524970/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1564192/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1573840/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1586476/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1785953/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1816748/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1828994/67‑1 (MQ=255) ccGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1907493/67‑1 (MQ=255) ccGGTCTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:30010/67‑1 (MQ=255) cGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:2262165/66‑1 (MQ=255) cGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1608425/66‑1 (MQ=255) cGGTGTTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:917980/66‑1 (MQ=255) ggTGTTGGCATCGGACCAGTGAAGAGTGCTGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1325877/65‑1 (MQ=255) gtgtTGGCATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:1014941/64‑1 (MQ=255) cATCGGACCAGTGAAGAGTGCGGAAAGGCCCGCAGCCGCCAGACCCGCTTCCAGTGc < 1:467354/57‑1 (MQ=255) | CCACGGCCGGTGTTGGCATCGGGCCAGTGAAGAGTGCGGAAAGGCCCGCTGCCGCCAGACCCGCTTCCAGTGC > minE/2148911‑2148983 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |