Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,418,642 T→C 100% N197N (AAT→AAC narP → DNA‑binding response regulator in two‑component regulatory system with NarQ or NarX

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,418,6420TC80.0% 165.9 / 35.4 80N197N (AAT→AACnarPDNA‑binding response regulator in two‑component regulatory system with NarQ or NarX
Reads supporting (aligned to +/- strand):  ref base T (0/16);  new base C (0/64);  total (0/80)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATA  >  minE/1418605‑1418698
                                     |                                                        
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCGACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1363550/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCCTTCt                             <  1:5471/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:2116924/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1758380/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:668991/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1786769/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:562657/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1907781/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1950812/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1988765/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:2005932/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:2030347/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:104320/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:2072748/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:453828/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:2083139/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:699131/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:421768/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:2235924/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:2241383/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:2293433/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:235960/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:26655/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:294723/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:30379/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:369075/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:381661/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:41799/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:420400/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1479810/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:110622/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:932913/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:845780/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:11386/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1196004/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:784275/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:781316/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1349754/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1405400/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:781191/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:773584/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:143067/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1440356/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1481342/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1512969/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:765822/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1514927/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1519295/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1568587/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1574596/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:765271/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1662812/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1667741/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:756353/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:749868/67‑1 (MQ=255)
tAAAAGTCCATATTCGCAATATGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1935734/67‑1 (MQ=255)
 aaaaGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:2048600/66‑1 (MQ=255)
 aaaaGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1128450/66‑1 (MQ=255)
 aaaaGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1247346/66‑1 (MQ=255)
 aaaaGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1514556/66‑1 (MQ=255)
 aaaaGTCCATATTCGCAATCTGCTGCGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1628708/66‑1 (MQ=255)
                        tgcGTAAACTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:1996131/43‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACGATa  <  1:759137/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:1699704/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:955521/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:1130990/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:1240884/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:1416151/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:1425948/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:2203902/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:1725521/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:74850/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:702169/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:173840/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:1760626/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:578767/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:187100/66‑1 (MQ=255)
                            tAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATa  <  1:2079479/66‑1 (MQ=255)
                             aaaCTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:805756/38‑1 (MQ=255)
                                cTCAACGTCCGCTCACGCGTGGCGGCCACCATTCt                             <  1:454843/35‑1 (MQ=255)
                                     |                                                        
TAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATA  >  minE/1418605‑1418698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: