| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,599,135 | A→T | 18.8% | I33I (ATT→ATA) | gor ← | glutathione oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,599,135 | 0 | A | T | 18.8% | 202.7 / 39.9 | 85 | I33I (ATT→ATA) | gor | glutathione oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (24/45); new base T (4/12); total (28/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.63e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.38e-01 | |||||||||||
CCGCGTGCCACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCTG > minE/2599065‑2599195 | ccgcGTGCCACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCa < 1:2738527/71‑1 (MQ=255)ccgcGTGCCACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCa < 1:1395052/71‑1 (MQ=255)ccgcGTGCCACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCa < 1:2314039/71‑1 (MQ=255) gcgTGCCACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAAt < 1:901072/71‑1 (MQ=255) ccACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAgcg < 1:4095330/71‑1 (MQ=255) ccACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAgcg < 1:3543614/71‑1 (MQ=255) ccACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAgcg < 1:2652588/71‑1 (MQ=255) ccACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAgcg < 1:2080420/71‑1 (MQ=255) ccACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAgcg > 1:1727680/1‑71 (MQ=255) aTCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCaa < 1:96681/61‑1 (MQ=255) aTCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCaa < 1:1079573/61‑1 (MQ=255) tCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACAt < 1:3685821/71‑1 (MQ=255) tCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACAt > 1:705794/1‑71 (MQ=255) tCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACAt > 1:1403718/1‑71 (MQ=255) aCTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACAttt > 1:470157/1‑71 (MQ=255) aCTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACAttt < 1:3650821/71‑1 (MQ=255) aCTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACAtt < 1:2180158/70‑1 (MQ=255) cTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCTCACATTTc < 1:1954759/71‑1 (MQ=255) cTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTc < 1:2181304/71‑1 (MQ=255) cTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTc < 1:2876506/71‑1 (MQ=255) cTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTc < 1:3188744/71‑1 (MQ=255) tttCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTCTgg < 1:3977316/70‑1 (MQ=255) ggCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTa < 1:334251/71‑1 (MQ=255) acacaGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTCTg > 1:3311400/1‑62 (MQ=255) acacaGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTCTg > 1:2849943/1‑62 (MQ=255) acacaGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTAc > 1:1731373/1‑69 (MQ=255) acacaGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACa > 1:2703767/1‑70 (MQ=255) acaGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTg < 1:2570656/60‑1 (MQ=255) acaGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTg < 1:3009812/60‑1 (MQ=255) ccAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAg > 1:2157777/1‑44 (MQ=255) ccAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTCTGGCCGTACATAGCcgc > 1:3144049/1‑71 (MQ=255) aCATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGca < 1:114861/45‑1 (MQ=255) aCATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGca < 1:3584464/45‑1 (MQ=255) aCATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGca < 1:2165391/45‑1 (MQ=255) aCATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGca < 1:2121764/45‑1 (MQ=255) aCATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGca < 1:142370/45‑1 (MQ=255) aCATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGca < 1:1946107/45‑1 (MQ=255) cATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTa < 1:4031214/58‑1 (MQ=255) cATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTa < 1:1850779/58‑1 (MQ=255) cATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTa < 1:3524188/58‑1 (MQ=255) cATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTa < 1:1823428/58‑1 (MQ=255) aTTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGt > 1:3908558/1‑71 (MQ=255) aTTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGt < 1:206565/71‑1 (MQ=255) tttACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCAGATTTCTGGCCGTACATAGCCGCGCGGtt < 1:381711/71‑1 (MQ=255) tttACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGc > 1:3623706/1‑52 (MQ=255) tttACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGc > 1:1315538/1‑52 (MQ=255) tttACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGtt < 1:234713/71‑1 (MQ=255) tttACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGtt < 1:2773174/71‑1 (MQ=255) tttACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGtt < 1:1735692/71‑1 (MQ=255) tACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCa > 1:253875/1‑35 (MQ=255) tACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCa > 1:1089223/1‑35 (MQ=255) aCGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGa < 1:1561394/70‑1 (MQ=255) cGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATg < 1:819263/71‑1 (MQ=255) gTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGcc < 1:2667428/54‑1 (MQ=255) tGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTgg > 1:2098388/1‑41 (MQ=255) tGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGcc < 1:2672285/53‑1 (MQ=255) tGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGc > 1:2309523/1‑70 (MQ=255) tGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGc > 1:887465/1‑70 (MQ=255) cAGCTCTTTGGCTTCTATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:1656001/71‑1 (MQ=255) cAGCTCTTTGGCTTCTATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:3226304/71‑1 (MQ=255) cAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCcgcgc < 1:2323125/50‑1 (MQ=255) cAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGa > 1:1186543/1‑56 (MQ=255) cAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc > 1:3532713/1‑71 (MQ=255) cAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccg > 1:1644795/1‑70 (MQ=255) cAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccg > 1:2914401/1‑70 (MQ=255) aaGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACa > 1:1781103/2‑41 (MQ=255) aGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgcc < 1:2788737/71‑1 (MQ=255) tctctTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGtt < 1:2800536/51‑1 (MQ=255) tctTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCt > 1:3783434/1‑71 (MQ=255) tctTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCt > 1:1813287/1‑71 (MQ=255) tctTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCt > 1:2903417/1‑71 (MQ=255) tctTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCt > 1:3551364/1‑71 (MQ=255) tctTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCt > 1:2668018/1‑71 (MQ=255) tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATa < 1:2280714/37‑1 (MQ=255) tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATa < 1:3844730/37‑1 (MQ=255) tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATa < 1:3877556/37‑1 (MQ=255) tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATa < 1:4115902/37‑1 (MQ=255) tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATa < 1:842220/37‑1 (MQ=255) tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATa < 1:632931/37‑1 (MQ=255) tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:1551895/65‑1 (MQ=255) tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:2873848/65‑1 (MQ=255) tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:3283320/65‑1 (MQ=255) tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:1509760/65‑1 (MQ=255) tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:4121025/65‑1 (MQ=255) tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:3493507/65‑1 (MQ=255) tGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCTg < 1:2505202/68‑1 (MQ=255) cTTCTATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgcc < 1:719078/61‑1 (MQ=255) cTTCTATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgcc < 1:1293314/61‑1 (MQ=255) cTTCTATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgcc < 1:1275494/61‑1 (MQ=255) tCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgcc < 1:3345376/59‑1 (MQ=255) | CCGCGTGCCACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCTG > minE/2599065‑2599195 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |