Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 609,683 | Δ1 bp | 100% | coding (571/2283 nt) | pflB ← | pyruvate formate lyase I |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 609,683 | 0 | C | . | 94.1% | 128.9 / 2.7 | 34 | coding (571/2283 nt) | pflB | pyruvate formate lyase I |
Reads supporting (aligned to +/- strand): ref base C (2/0); new base . (32/0); total (34/0) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
AGTTTGTCTTTCATCAGGTAGTCGATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATACGGCCACGGCCATATGCATCT > minE/609661‑609744 | aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCGCCGATGATacggcc > 1:354339/1‑67 (MQ=39) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCg > 1:806363/1‑56 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:27488/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:861464/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:816810/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:815281/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:796189/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:776574/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:707342/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:514137/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:481777/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:436699/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:395169/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:295751/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:295158/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:1175347/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:22578/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:1410146/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:1475555/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:156287/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:167895/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:1711883/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:1899162/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:190763/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:20188/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:203585/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:2052302/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:2121431/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:233154/1‑67 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggc > 1:1328119/1‑66 (MQ=255) aGTTTGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggc > 1:1272578/1‑66 (MQ=255) aGTTAGTCTTTCATCAGGTAGT‑GATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATacggcc > 1:278621/1‑67 (MQ=255) gTAGTCGATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATACGGCCACGGCCATATGCATc > 1:1623122/1‑66 (MQ=255) gTAGTCGATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATACGGCCACGGCCATATGCATCt > 1:768436/1‑67 (MQ=255) | AGTTTGTCTTTCATCAGGTAGTCGATACCGTACAGCGCAACGCGACGGTAGTCACCGATGATACGGCCACGGCCATATGCATCT > minE/609661‑609744 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |