| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,057,769 | Δ1 bp | 100% | coding (992/4617 nt) | lhr → | predicted ATP‑dependent helicase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,057,769 | 0 | C | . | 100.0% | 39.5 / NA | 10 | coding (992/4617 nt) | lhr | predicted ATP‑dependent helicase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (10/0); total (10/0) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CTTTACGCCGCACGCTTACAGCGTTCCCCGTCTATCGCCGTTGATGCGGCCCATTTCGAGTCGACCTC > minE/1057720‑1057787 | cTTTACGCCGCACGCTTACAGCGTTCCCCGTCTATCGCCGTTGATGCGG‑CCATTTCGAGTCGACCTc > 1:1066396/1‑67 (MQ=255)cTTTACGCCGCACGCTTACAGCGTTCCCCGTCTATCGCCGTTGATGCGG‑CCATTTCGAGTCGACCTc > 1:1068511/1‑67 (MQ=255)cTTTACGCCGCACGCTTACAGCGTTCCCCGTCTATCGCCGTTGATGCGG‑CCATTTCGAGTCGACCTc > 1:1119002/1‑67 (MQ=255)cTTTACGCCGCACGCTTACAGCGTTCCCCGTCTATCGCCGTTGATGCGG‑CCATTTCGAGTCGACCTc > 1:1225871/1‑67 (MQ=255)cTTTACGCCGCACGCTTACAGCGTTCCCCGTCTATCGCCGTTGATGCGG‑CCATTTCGAGTCGACCTc > 1:1881695/1‑67 (MQ=255)cTTTACGCCGCACGCTTACAGCGTTCCCCGTCTATCGCCGTTGATGCGG‑CCATTTCGAGTCGACCTc > 1:192854/1‑67 (MQ=255)cTTTACGCCGCACGCTTACAGCGTTCCCCGTCTATCGCCGTTGATGCGG‑CCATTTCGAGTCGACCTc > 1:2051234/1‑67 (MQ=255)cTTTACGCCGCACGCTTACAGCGTTCCCCGTCTATCGCCGTTGATGCGG‑CCATTTCGAGTCGACCTc > 1:2086486/1‑67 (MQ=255)cTTTACGCCGCACGCTTACAGCGTTCCCCGTCTATCGCCGTTGATGCGG‑CCATTTCGAGTCGACCTc > 1:626928/1‑67 (MQ=255)cTTTACGCCGCACGCTTACAGCGTTCCCCGTCTATCGCCGTTGATGCGG‑CCATTTCGAGTCGACCTc > 1:851252/1‑67 (MQ=255) | CTTTACGCCGCACGCTTACAGCGTTCCCCGTCTATCGCCGTTGATGCGGCCCATTTCGAGTCGACCTC > minE/1057720‑1057787 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |