| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,234,886 | Δ2 bp | 100% | coding (90‑91/1179 nt) | purT → | phosphoribosylglycinamide formyltransferase 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,234,886 | 0 | G | . | 100.0% | 113.1 / NA | 26 | coding (90/1179 nt) | purT | phosphoribosylglycinamide formyltransferase 2 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (26/0); total (26/0) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| * | minE | 1,234,887 | 0 | T | . | 100.0% | 113.1 / NA | 26 | coding (91/1179 nt) | purT | phosphoribosylglycinamide formyltransferase 2 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (26/0); total (26/0) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CGTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTC > minE/1234838‑1234952 || cgTGATGTTATTAGGCTCCGGTGCACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:1795846/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:1941427/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:961890/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:806520/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:793383/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:715705/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:516543/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:405262/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:387092/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:375818/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:375661/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:258355/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:1995243/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:1007525/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:170232/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:1665691/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:159023/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:144394/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:1353201/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:1246606/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:1213093/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:1193655/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:1087208/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:1071231/1‑67 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTa > 1:76665/1‑65 (MQ=255)cgTGATGTTATTAGGCTCCGGTGAACTGCGTAAAGAAGTGGCAATCGA‑‑GTCAGCGTCTCGGCGTaga > 1:158997/1‑67 (MQ=255) gtgtCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTc > 1:1776453/1‑67 (MQ=255) gtgtCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTc > 1:88694/1‑67 (MQ=255) || CGTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTCAGCGTCTCGGCGTAGAGGTGATTGCCGTCGATCGCTATGCCGACGCACCAGCCATGCATGTC > minE/1234838‑1234952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |