| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,407,773 | Δ1 bp | 100% | coding (42/1590 nt) | yejF → | fused predicted oligopeptide transporter subunits and ATP‑binding components of ABC superfamily |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,407,773 | 0 | T | . | 100.0% | 108.6 / NA | 25 | coding (42/1590 nt) | yejF | fused predicted oligopeptide transporter subunits and ATP‑binding components of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (25/0); total (25/0) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGGTTTTCGCCATCAGCAAA > minE/1407722‑1407789 | gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1883556/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:982474/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:783178/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:530199/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:442261/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:431475/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:296427/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:2090346/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1976091/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1949007/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1005886/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1817581/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1729671/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1725387/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1711980/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1562103/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1450923/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1290378/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1185492/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1160837/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1028988/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaaa > 1:1026540/1‑67 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaa > 1:1976890/1‑66 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaa > 1:385614/1‑66 (MQ=255)gCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGG‑TTTCGCCATCAGCaa > 1:98214/1‑66 (MQ=255) | GCGGTGTAGCATGACGCAAACTCTGTTAGCGATTGAAAATTTGTCGGTGGGTTTTCGCCATCAGCAAA > minE/1407722‑1407789 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |