Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 410,359:1 | +C | 100% | coding (1997/2583 nt) | leuS ← | leucyl‑tRNA synthetase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 410,359 | 1 | . | C | 83.3% | 53.1 / 5.1 | 18 | coding (1997/2583 nt) | leuS | leucyl‑tRNA synthetase |
Reads supporting (aligned to +/- strand): ref base . (3/0); new base C (0/15); total (3/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.23e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. |
TGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAG‑CCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAACATCA > minE/410317‑410419 | tgCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAG‑CCCCTTCCACACCGGATTCCTGcc > 1:719630/1‑67 (MQ=255) tgCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAG‑CCCCTTCCACACCGGATTCCTGcc > 1:690510/1‑67 (MQ=255) tgCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAG‑CCCCTTCCACACCGGATTCCTGcc > 1:575405/1‑67 (MQ=255) ggTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAAcatca < 1:246605/67‑1 (MQ=255) ggTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAAcatca < 1:96307/67‑1 (MQ=255) ggTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAAcatca < 1:88019/67‑1 (MQ=255) ggTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAAcatca < 1:721193/67‑1 (MQ=255) ggTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAAcatca < 1:477503/67‑1 (MQ=255) ggTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAAcatca < 1:423488/67‑1 (MQ=255) ggTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAAcatca < 1:1001836/67‑1 (MQ=255) ggTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAAcatca < 1:1922849/67‑1 (MQ=255) ggTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAAcatca < 1:1790424/67‑1 (MQ=255) ggTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAAcatca < 1:1707763/67‑1 (MQ=255) ggTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAAcatca < 1:1413414/67‑1 (MQ=255) ggTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAAcatca < 1:134746/67‑1 (MQ=255) ggTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAAcatca < 1:1191665/67‑1 (MQ=255) ggTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAATCATATCAGCCGGAGAAGCAAAcatca < 1:1875956/67‑1 (MQ=255) gTTAGCCCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAAcatca < 1:1396262/66‑1 (MQ=255) | TGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAG‑CCCCTTCCACACCGGATTCCTGCCATTCGAGAGTCATATCAGCCGGAGAAGCAAACATCA > minE/410317‑410419 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |