Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1206450	1206482	33	16 [0]	[0] 9	manX	fused mannose‑specific PTS enzyme IIAB components

ACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATG  >  minE/1206383‑1206449                                                                   | aCCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:1109200/67‑1 (MQ=255) aCCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:1159045/67‑1 (MQ=255) aCCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:36874/67‑1 (MQ=255) aCCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:578391/67‑1 (MQ=255) aCCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:640368/67‑1 (MQ=255) aCCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:692748/67‑1 (MQ=255) aCCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCAGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:1555229/67‑1 (MQ=255) aCCCGCTGCCGCAGCACCAAAAGAGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:392846/67‑1 (MQ=255)  cccGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:1445115/66‑1 (MQ=255)  cccGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:1815542/66‑1 (MQ=255)  cccGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:358550/66‑1 (MQ=255)     gCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:223028/63‑1 (MQ=255)        gCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:1246853/60‑1 (MQ=255)            cagcaCCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:2117276/56‑1 (MQ=255)                 ccAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:1193083/51‑1 (MQ=255)                                aCTCCGGCAAAACCAATGGGGCCAAACGACTACATg  <  1:1774003/36‑1 (MQ=255)                                                                   | ACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATG  >  minE/1206383‑1206449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑