Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1318560	1318574	15	35 [0]	[0] 16	cld	regulator of length of O‑antigen component of lipopolysaccharide chains

ACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACA  >  minE/1318493‑1318559                                                                   | acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAACCa  <  1:1911608/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:493903/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1995091/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:2103805/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:2107192/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:2128560/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:37715/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:453654/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:467002/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1898506/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:65282/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:723949/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:761089/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:76442/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:795148/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:879751/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:894560/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:912798/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1873618/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1076935/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1102568/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1133745/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1164409/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1217772/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:130767/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1346058/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1472865/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1604288/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1660134/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1668183/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:176942/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1789920/67‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1069898/67‑1 (MQ=255)  cgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa  <  1:1420841/66‑1 (MQ=255)                           tcaaatcaatcTGTTCCGGGTCATGGGTTTGCCCAGAAACa  <  1:1309030/41‑1 (MQ=255)                                                                   | ACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACA  >  minE/1318493‑1318559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑