Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1410667	1410670	4	36 [0]	[0] 12	bcr	bicyclomycin/multidrug efflux system

TGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCA  >  minE/1410600‑1410666                                                                   | tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:490749/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1019082/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:2052310/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:2072232/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:2095603/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:2125964/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:2138337/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:407577/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:411020/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1959271/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:610457/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:67400/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:713916/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:823009/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:912226/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:918250/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:951729/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1195767/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1028928/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1029253/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1035051/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1057237/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1068920/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1116740/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1169494/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1953630/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1314663/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1404116/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1422516/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1427079/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1475137/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1586504/67‑1 (MQ=255) tgAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1860074/67‑1 (MQ=255)  gAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:559858/66‑1 (MQ=255)  gAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:1459415/66‑1 (MQ=255)          tGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCa  <  1:705084/58‑1 (MQ=255)                                                                   | TGAAATGGCTGACGACGCTCCGGTGGTAAGGTTTCTTTAATCAGGAAGAAAATCATTGCCGAAGCCA  >  minE/1410600‑1410666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑