Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1549586	1549586	1	10 [0]	[0] 5	vacJ	predicted lipoprotein

GAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTA  >  minE/1549536‑1549585                                                  | gAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTa  <  1:1259296/50‑1 (MQ=255) gAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTa  <  1:1469085/50‑1 (MQ=255) gAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTa  <  1:1651607/50‑1 (MQ=255) gAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTa  <  1:1881500/50‑1 (MQ=255) gAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTa  <  1:2073271/50‑1 (MQ=255) gAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTa  <  1:72914/50‑1 (MQ=255) gAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTa  <  1:956994/50‑1 (MQ=255) gAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTa  <  1:976294/50‑1 (MQ=255) gAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTa  <  1:985440/50‑1 (MQ=255)  aaTCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTa  <  1:1747962/49‑1 (MQ=255)                                                  | GAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTA  >  minE/1549536‑1549585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑