Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1635649	1635651	3	25 [0]	[0] 9	acrD	aminoglycoside/multidrug efflux system

TCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAT  >  minE/1635582‑1635648                                                                   | tCGGTACAGTTGCCCAGGGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:809681/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:2099706/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:987711/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:816356/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:80776/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:527245/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:480790/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:457567/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:383483/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:300195/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:261951/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:243740/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:10514/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:2050946/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:1900030/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:1772962/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:1685200/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:1509134/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:1433233/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:1431457/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:1428611/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:1336817/67‑1 (MQ=255) tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:1136288/67‑1 (MQ=255)  cGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:130992/66‑1 (MQ=255)   ggTACAGTTGCCCAGCGGTTCAACGCAACATCTGACCCTGAAAGTCGTTGAGCAAATCGAGAAAt  <  1:752629/65‑1 (MQ=255)                                                                   | TCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAAT  >  minE/1635582‑1635648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑