Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1768633	1768647	15	56 [0]	[0] 14	rluD	23S rRNA pseudouridine synthase

TCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGCC  >  minE/1768566‑1768632                                                                   | tCGCTGGTCGAGGATCCATTCTTTTATTCGCTAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:93542/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCACAGcc  <  1:277945/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:206863/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1674608/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1794752/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:671414/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1818989/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:600418/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1940867/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1953619/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:2045835/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:2053684/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:2060860/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1617988/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:2115158/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:279985/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:30369/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:308684/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:309793/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:437030/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:397354/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:419723/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:143798/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1015647/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1002301/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1092602/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1157643/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1252130/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1264851/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1279397/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1290500/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1318808/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:85892/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:789873/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1483666/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1493188/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1534205/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1537072/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:761919/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:751254/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1582817/67‑1 (MQ=255) tCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1593405/67‑1 (MQ=255)  cGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:388440/66‑1 (MQ=255)                     cTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:984974/47‑1 (MQ=255)                     cTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:705472/47‑1 (MQ=255)                     cTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:436020/47‑1 (MQ=255)                     cTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:394243/47‑1 (MQ=255)                     cTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1937655/47‑1 (MQ=255)                     cTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:181346/47‑1 (MQ=255)                     cTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:17704/47‑1 (MQ=255)                     cTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1577774/47‑1 (MQ=255)                     cTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1547909/47‑1 (MQ=255)                     cTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1460727/47‑1 (MQ=255)                     cTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1396419/47‑1 (MQ=255)                     cTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1165083/47‑1 (MQ=255)                     cTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGcc  <  1:1059573/47‑1 (MQ=255)                                                                   | TCGCTGGTCGAGGATCCATTCTTTTATTCGCGAACGTGAATAATCCGGGAACATTTCGGCCAAAGCC  >  minE/1768566‑1768632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑