Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1827778	1827778	1	49 [0]	[0] 23	mutS	methyl‑directed mismatch repair protein

CGCGTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCG  >  minE/1827712‑1827777                                                                  | cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACGGCCg  <  1:248515/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:498178/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:2079673/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:2084918/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:2090950/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:2094084/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:227574/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:247715/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:248988/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:252475/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:284938/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:477292/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:2027389/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:505128/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:585348/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:666037/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:685542/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:686001/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:712118/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:74880/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:833368/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:852823/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:912969/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:941478/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1508462/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1155050/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1174533/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:121262/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1294903/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1369263/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:137285/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1383180/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1400845/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:142181/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1463527/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:147352/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1589531/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1609455/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1640902/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1642503/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:178366/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1811514/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1836395/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1849642/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1946023/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:2012806/66‑1 (MQ=255) cgcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1100625/66‑1 (MQ=255)  gcgTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:1124332/65‑1 (MQ=255)                  ccAGCAAACTATTTGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCg  <  1:207867/49‑1 (MQ=255)                                                                  | CGCGTGTTGCTTGAGCGCCAGCAAACTATTGGCGCATTGCAGGATTTCACCGCCGGGCTACAGCCG  >  minE/1827712‑1827777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑