Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1980777	1980787	11	17 [0]	[0] 23	yqgF	predicted Holliday junction resolvase

CTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATG  >  minE/1980711‑1980776                                                                  | cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:1899854/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:856845/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:837098/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:758678/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:707537/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:580857/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:515019/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:460680/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:1997889/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:1827467/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:1780357/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:1692634/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:1658320/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:1538304/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:1375970/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATg  >  1:1074793/1‑66 (MQ=255) cTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTACGGTGTTGAAGTAAAGCTCCATg  >  1:1066063/1‑66 (MQ=255)                                                                  | CTGCCAGAGCGCGTAAATTTGCCAACCGTATTCATGGCCGTTTCGGTGTTGAAGTAAAGCTCCATG  >  minE/1980711‑1980776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑