Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	235371	235379	9	52 [0]	[0] 4	aroL	shikimate kinase II

GCGAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAG  >  minE/235304‑235370                                                                   | gctaaGTTGCGCATATTATCATCGACGCAACAAACGACCCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:803723/4‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGCCGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1129217/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAGCAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1975994/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAACCGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:264572/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:533895/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1794202/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1805042/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1862926/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1889881/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1913274/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1966378/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:2088431/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:31282/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:322403/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:405379/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:458868/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1793204/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:749310/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:801549/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:904471/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:909300/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:91534/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:958485/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:960877/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:963036/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:964344/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:979823/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1547992/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:103177/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1070158/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1111144/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1131095/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1147905/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1232921/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1264875/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1273517/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1349395/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:138187/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1469385/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1486966/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1019625/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1569494/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1576691/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1584406/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1622303/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1624291/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1658366/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1667846/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1668761/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1746235/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:178133/1‑67 (MQ=255) gcgAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAg  >  1:1788670/1‑67 (MQ=255)                                                                   | GCGAAGTTGCGCATATTATCATCGACGCAACAAACGAACCCAGCCAGGTGATTTCTGAAATTCGCAG  >  minE/235304‑235370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑