Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1341539	1341544	6	4 [0]	[0] 58	wcaA	predicted glycosyl transferase

GCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGAA  >  minE/1341545‑1341611 |                                                                   gCGTTTGTAGAACAGGCGGCGTTAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:205743/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGTGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1779327/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTgggca  <  1:1954284/67‑3 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:263918/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1956713/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1979250/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1988391/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1990621/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1996770/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:200759/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:2053287/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:2074655/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:2083319/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:2108037/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:2141597/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1930983/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:343248/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:368260/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:370924/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:374541/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:378872/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:435369/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:513199/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:668586/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:732564/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:734040/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:76657/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:77709/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:98308/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:149733/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:108349/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1083898/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1110857/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1130452/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1197650/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1237938/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1359316/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1366930/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1417346/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1427973/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1431542/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1449548/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1464644/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1042671/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1523280/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1581135/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:16276/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1650846/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1685841/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1688256/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1691217/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1803891/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1843149/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1868364/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1892359/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1902111/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa  <  1:1930783/67‑1 (MQ=255) gCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTCGGaa  <  1:277487/67‑1 (MQ=255) |                                                                   GCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGAA  >  minE/1341545‑1341611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑