Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1815368	1815437	70	26 [0]	[0] 35	recX	regulatory protein for RecA

CGCGCGCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGAAA  >  minE/1815438‑1815503 |                                                                  cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:540342/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1993732/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:2007918/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:2123457/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:2133852/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:293643/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:416827/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:421513/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:501088/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1990372/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:576291/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:584758/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:593594/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:684174/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:74818/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:851748/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:852546/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:907505/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1705056/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1283568/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1477631/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:147940/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1481721/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1576332/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1601716/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1651343/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1690897/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1027956/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:170948/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1728472/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1778696/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1799821/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1827186/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:1943843/66‑1 (MQ=255) cgcgcgCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGaaa  <  1:194435/66‑1 (MQ=255) |                                                                  CGCGCGCCAGTGCGCACCAGTCGATGTCACATTCACGCATCGCTTTTTCTGTCGCTTCGCGGGAAA  >  minE/1815438‑1815503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑