Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1827977	1828045	69	5 [0]	[0] 9	mutS	methyl‑directed mismatch repair protein

ACGAAGAGCTGGATGAGTGGCGCGCGCTGGCTGACGGCGCGACCGATTATCTGGAG  >  minE/1828046‑1828101 |                                                        aCGAAGAGCTGGATGAGTGGCGCGCGCTGGCTGACGGCGCGACCGATTATCTGGAg  <  1:1207953/56‑1 (MQ=255) aCGAAGAGCTGGATGAGTGGCGCGCGCTGGCTGACGGCGCGACCGATTATCTGGAg  <  1:1257143/56‑1 (MQ=255) aCGAAGAGCTGGATGAGTGGCGCGCGCTGGCTGACGGCGCGACCGATTATCTGGAg  <  1:1578847/56‑1 (MQ=255) aCGAAGAGCTGGATGAGTGGCGCGCGCTGGCTGACGGCGCGACCGATTATCTGGAg  <  1:1963438/56‑1 (MQ=255) aCGAAGAGCTGGATGAGTGGCGCGCGCTGGCTGACGGCGCGACCGATTATCTGGAg  <  1:1972478/56‑1 (MQ=255) aCGAAGAGCTGGATGAGTGGCGCGCGCTGGCTGACGGCGCGACCGATTATCTGGAg  <  1:585273/56‑1 (MQ=255) aCGAAGAGCTGGATGAGTGGCGCGCGCTGGCTGACGGCGCGACCGATTATCTGGAg  <  1:735869/56‑1 (MQ=255) aCGAAGAGCTGGATGAGTGGCGCGCGCTGGCGGACGGCGCGACCGATTATCTGGAg  <  1:1811187/56‑1 (MQ=255) aCGAAGAGCTGGATGAGTGGCGCGCGCGGGCTGACGGCGCGACCGATTATCTGGAg  <  1:2113910/56‑1 (MQ=255) |                                                        ACGAAGAGCTGGATGAGTGGCGCGCGCTGGCTGACGGCGCGACCGATTATCTGGAG  >  minE/1828046‑1828101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑