Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1938213	1938235	23	3 [0]	[0] 31	xerD	site‑specific tyrosine recombinase

GCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTG  >  minE/1938236‑1938301 |                                                                  gCACCATGGTTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:796633/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCt   >  1:76079/1‑65 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCt   >  1:473234/1‑65 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:2148656/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:985344/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:942036/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:903582/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:849051/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:811869/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:793934/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:62536/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:547378/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:540915/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:512400/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:299715/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:256841/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:1153539/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:2070797/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:1931750/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:1883297/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:1856483/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:1842437/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:1815165/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:172864/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:1708468/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:1685767/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:1530568/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:1388254/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:1341227/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTg  >  1:1164094/1‑66 (MQ=255) gCACCATGATTTAATAAATGAGTCGCAAAAGCGTGACGCAACACAt                      >  1:2090011/1‑46 (MQ=255) |                                                                  GCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTG  >  minE/1938236‑1938301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑