Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2169922	2169943	22	15 [0]	[0] 58	rpoN	RNA polymerase, sigma 54 (sigma N) factor

GCTGCTTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTG  >  minE/2169944‑2170010 |                                                                   gctgctTGAGCAAATCGACACTCATGAAGAAATCGACAcc                             >  1:726986/1‑40 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCcg                           >  1:653240/1‑42 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGaaa                      >  1:2154000/1‑47 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCTAGACAGTGAAACGCTg  >  1:216908/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGAGAGTGAAACGCTg  >  1:514435/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCt   >  1:1589729/1‑66 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCt   >  1:1172276/1‑66 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCt   >  1:482962/1‑66 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:235772/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:440945/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:438532/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:384109/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:350378/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:297820/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:2044909/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:231381/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:2146195/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1965117/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:447913/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:470761/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:512555/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:56292/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:576016/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:604143/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:632508/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:71353/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:720648/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:780209/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:805947/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:905648/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1565575/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1033135/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1094081/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:11424/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1314387/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:132466/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1325266/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1348688/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1368142/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1397364/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1517497/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1532540/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1536084/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1551575/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1021473/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1693739/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1718613/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1748098/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1784782/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:182668/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1831060/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1838773/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1850681/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1903489/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1910349/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1920343/1‑67 (MQ=255) gctgctTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:1935064/1‑67 (MQ=255) gctgatTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTg  >  1:275455/1‑67 (MQ=255) |                                                                   GCTGCTTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTG  >  minE/2169944‑2170010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑