Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2517023	2517030	8	8 [0]	[0] 42	spoT	bifunctional (p)ppGpp synthetase II and guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase

CCAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTC  >  minE/2517031‑2517097 |                                                                   ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTg                         >  1:1706766/1‑44 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGAcgc                  >  1:1878324/1‑51 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:210982/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:2062122/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:2139593/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:2146905/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:23187/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:332295/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:456494/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:461404/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:48110/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:553870/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:572535/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:609800/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:615232/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:652893/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:741928/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:761876/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:771229/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:802485/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:892834/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:924049/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1685284/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1067458/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1104327/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1117072/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1123170/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1217000/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1248439/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1291210/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1511616/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1527701/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:2107206/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1745839/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1869227/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1874403/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1895194/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1897761/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1990760/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:2004873/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:2032850/1‑67 (MQ=255) ccAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTc  >  1:1013384/1‑67 (MQ=255) |                                                                   CCAGATGCACACGGTCACGAGCGGTCAGACGAATAAAGGCGCTGTAGACGCGACCATCTTTCTCTTC  >  minE/2517031‑2517097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑