Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2661924	2661938	15	44 [0]	[0] 50	rtcR	sigma 54‑dependent transcriptional regulator of rtcBA expression

TCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTT  >  minE/2661939‑2662005 |                                                                   tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTccgccg                        >  1:1706498/1‑45 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAAccat  >  1:904068/1‑65 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:48153/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1829152/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1879131/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1941825/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:2016538/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:2026492/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:2103786/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:2130783/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:273159/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:27755/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:332036/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:360991/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1827706/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:492836/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:544490/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:676949/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:684295/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:686587/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:716416/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:824714/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:827168/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:942389/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:951592/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1439927/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1075591/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1105946/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1184168/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:11927/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:127959/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1297759/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1304970/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1319513/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:13267/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1395807/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1422274/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:104242/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1461393/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1504018/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1630887/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1630924/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1643788/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1694579/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1717430/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1718406/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1755626/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:178052/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCtt  >  1:1812128/1‑67 (MQ=255) tCTGCGCCCAGTTCGCCAATCTCATAAAGAAACAACATTacgccg                        >  1:921882/1‑45 (MQ=38) |                                                                   TCTGCGCCCAGTTCGCCAATCTCATCAAGAAACAACATTCCGCCGTTGGCGCTGCGTAATAAACCTT  >  minE/2661939‑2662005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑