Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 879,563 | T→C | 100% | Y18H (TAT→CAT) | yciM → | conserved hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 879,563 | 0 | T | C | 100.0% | 60.7 / NA | 17 | Y18H (TAT→CAT) | yciM | conserved hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/17); total (0/17) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGG > minE/879503‑879569 | tatcTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTTGCCGCTGCCTATGGCTGGCATATgg < 1:1651146/64‑1 (MQ=255) tAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:1821514/67‑1 (MQ=255) tAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:990710/67‑1 (MQ=255) tAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:85432/67‑1 (MQ=255) tAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:779826/67‑1 (MQ=255) tAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:365560/67‑1 (MQ=255) tAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:1868076/67‑1 (MQ=255) tAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:105631/67‑1 (MQ=255) tAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:1637412/67‑1 (MQ=255) tAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:1541687/67‑1 (MQ=255) tAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:1501607/67‑1 (MQ=255) tAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:1413556/67‑1 (MQ=255) tAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:1216704/67‑1 (MQ=255) tAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:1127034/67‑1 (MQ=255) aaCTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:2032896/66‑1 (MQ=255) aaCTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:466032/66‑1 (MQ=255) cTTTTGCCTGTAGCCGCTGCCTATGGCTGGCATATgg < 1:35072/37‑1 (MQ=255) | TAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGG > minE/879503‑879569 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |