Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 1,027,446 | A→G | 100% | N134S (AAC→AGC) | malX → | fused maltose and glucose‑specific PTS enzyme IIBC components |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 1,027,446 | 0 | A | G | 91.7% | 32.8 / ‑3.1 | 12 | N134S (AAC→AGC) | malX | fused maltose and glucose‑specific PTS enzyme IIBC components |
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (0/11); total (1/11) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 8.33e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
CTGCCAACCACGGATGCCGCGGTTCTGAAAGCCAATAACATCCAGAGCATTCTTGGGATCCAGTCGATCGATA > minE/1027409‑1027481 | cTGCCAACCACGGATGCCGCGGTTCTGAAAGCCAATAGCATCCag < 1:11187/45‑1 (MQ=255) cTGCCAACCACGGATGCCGCGGTTCTGAAAGCCAATAGCATCCag < 1:1244855/45‑1 (MQ=255) cTGCCAACCACGGATGCCGCGGTTCTGAAAGCCAATAGCATCCag < 1:1410990/45‑1 (MQ=255) cTGCCAACCACGGATGCCGCGGTTCTGAAAGCCAATAGCATCCag < 1:1804252/45‑1 (MQ=255) cTGCCAACCACGGATGCCGCGGTTCTGAAAGCCAATAGCATCCag < 1:1894014/45‑1 (MQ=255) cTGCCAACCACGGATGCCGCGGTTCTGAAAGCCAATAGCATCCag < 1:2074351/45‑1 (MQ=255) cTGCCAACCACGGATGCCGCGGTTCTGAAAGCCAATAGCATCCag < 1:268057/45‑1 (MQ=255) cTGCCAACCACGGATGCCGCGGTTCTGAAAGCCAATAGCATCCag < 1:357258/45‑1 (MQ=255) cTGCCAACCACGGATGCCGCGGTTCTGAAAGCCAATAGCATCCag < 1:428581/45‑1 (MQ=255) cTGCCAACCACGGATGCCGCGGTTCTGAAAGCCAATAGCATCCag < 1:675019/45‑1 (MQ=255) tGCCAACCACGGATGCCGCGGTTCTGAAAGCCAATAGCATCCag < 1:538006/44‑1 (MQ=255) cACGGATGCCGCGGTTCTGAAAGCCAATAACATCCAGAGCATTCTTGGGATCCAGTCGATCGATa > 1:1842400/1‑65 (MQ=255) | CTGCCAACCACGGATGCCGCGGTTCTGAAAGCCAATAACATCCAGAGCATTCTTGGGATCCAGTCGATCGATA > minE/1027409‑1027481 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |