Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 1,598,488 | C→T | 35.9% | A60A (GCG→GCA) | yfeT ← | predicted DNA‑binding transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 1,598,488 | 0 | C | T | 35.9% | 40.5 / 36.7 | 39 | A60A (GCG→GCA) | yfeT | predicted DNA‑binding transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base C (21/4); new base T (7/7); total (28/11) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.31e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTGTATTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAC > minE/1598444‑1598514 | cTGTATTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAAtt < 1:878918/67‑1 (MQ=255) cTGTATTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAAtt < 1:788025/67‑1 (MQ=255) gTATTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGTGCGCCGAGTTTTTGGGCAAATTTc < 1:932930/67‑1 (MQ=255) gTATTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGTGCGCCGAGTTTTTGGGCAAATTTc < 1:612233/67‑1 (MQ=255) gTATTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGTGCGCCGAGTTTTTGGGCAAATTTc < 1:1202035/67‑1 (MQ=255) gTATTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGTGCGCCGAGTTTTTGGGCAAATTTc < 1:254537/67‑1 (MQ=255) gTATTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGTGCGCCGAGTTTTTGGGCAAATTTc < 1:101186/67‑1 (MQ=255) gTATTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTc < 1:416156/67‑1 (MQ=255) gTATTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTc < 1:183970/67‑1 (MQ=255) tATTCGCCTATTTACGCCATACGCAATTCAGTAAATCCTTGTGCGCCGAGTTTTTGGGCAAATTTc < 1:1889825/66‑1 (MQ=255) aTTCGCCTTTTAACGCCATACGCAATTCAGTAAATCCTTGTGCGCCGAGTTTTTGGGCAAATTTCAc > 1:3807/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGTGCGCCGAGTTTTTGGGCAAATTTCAc > 1:234146/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGTGCGCCGAGTTTTTGGGCAAATTTCAc > 1:261298/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGTGCGCCGAGTTTTTGGGCAAATTTCAc > 1:2038252/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGTGCGCCGAGTTTTTGGGCAAATTTCAc > 1:1819306/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGTGCGCCGAGTTTTTGGGCAAATTTCAc > 1:175313/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGTGCGCCGAGTTTTTGGGCAAATTTCAc > 1:120164/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTc > 1:812395/1‑65 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:501691/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:1049370/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:910352/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:8807/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:1093536/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:853758/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:844858/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:809543/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:1107268/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:784811/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:562836/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:1869112/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:1300878/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:1521428/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:340072/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:1764917/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:252921/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:2029764/1‑67 (MQ=255) aTTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:1925231/1‑67 (MQ=255) aTTCGCCTATTAACGCCAAACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAc > 1:233162/1‑67 (MQ=255) aCGCAATTCAGTAAATCCTTGTGCGCCGAGTTTTTGGGCAAATTTc < 1:1825778/46‑1 (MQ=255) | CTGTATTCGCCTATTAACGCCATACGCAATTCAGTAAATCCTTGCGCGCCGAGTTTTTGGGCAAATTTCAC > minE/1598444‑1598514 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |