Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,820,597 T→A 100% intergenic (‑90/‑97) norR ← / → norV DNA‑binding transcriptional activator/flavorubredoxin oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,820,5970TA97.7% 143.0 / ‑3.6 44intergenic (‑90/‑97)norR/norVDNA‑binding transcriptional activator/flavorubredoxin oxidoreductase
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base A (43/0);  total (43/1)
Fisher's exact test for biased strand distribution p-value = 2.27e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.36e-01
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GATATTGTCATATCGACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTTTATTTATAGAGTAAAAACAATCAGATAAAAAACTGGCACGCAATCTGCAATTAGCAAGA  >  minE/1820535‑1820656
                                                              |                                                           
gATATTGTCATATCGACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATtttatt                                                         >  1:950806/1‑67 (MQ=255)
gATATTGTCATATCGACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATtttatt                                                         >  1:2011995/1‑67 (MQ=255)
gATATTGTCATATCGACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATtttatt                                                         >  1:1471737/1‑67 (MQ=255)
gATATTGTCATATCGACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATtttatt                                                         >  1:173474/1‑67 (MQ=255)
gATATTGTCATATCGACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATtttatt                                                         >  1:2014441/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTaaaaa                                            >  1:971152/1‑66 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTaaaaa                                            >  1:1959350/1‑66 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTaaaaa                                            >  1:704174/1‑66 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTaaaaa                                            >  1:1870584/1‑66 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTaaaaa                                            >  1:62473/1‑66 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTaaaaa                                            >  1:1735847/1‑66 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTaaaaa                                            >  1:791698/1‑66 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTaaaaa                                            >  1:2129919/1‑66 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTaaaaa                                            >  1:226697/1‑66 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:565614/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:550290/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:53254/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:2083389/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:51036/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:659497/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:763563/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:770182/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:780474/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:822565/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:866709/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:914315/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:93598/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:9459/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:963589/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:1671200/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:1193026/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:1203094/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:1208879/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:123232/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:1276731/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:1360468/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:1523778/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:1632351/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:1636026/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:1738579/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:1747161/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:1874230/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:1985410/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:199888/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:2066467/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:1003049/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:22962/1‑67 (MQ=255)
              gACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTATATTTATAGAGTAAAAAc                                           >  1:400904/1‑67 (MQ=255)
                                                       cATAATTTTATTTATAGAGTAAAAACAATCAGATAAAAAACTGGCACGCAATCTGCAATTAGCAAGa  <  1:420775/67‑1 (MQ=255)
                                                              |                                                           
GATATTGTCATATCGACCATTTGATTGATAGTCATTTTGACTACTCATTAATGGGCATAATTTTATTTATAGAGTAAAAACAATCAGATAAAAAACTGGCACGCAATCTGCAATTAGCAAGA  >  minE/1820535‑1820656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: