Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 2,971,396 | T→C | 100% | V71A (GTG→GCG) | serB → | 3‑phosphoserine phosphatase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 2,971,396 | 0 | T | C | 97.8% | 161.9 / ‑3.7 | 45 | V71A (GTG→GCG) | serB | 3‑phosphoserine phosphatase |
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (0/44); total (0/45) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.37e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGTGGAAGATTATCAGGTGATT > minE/2971339‑2971415 | tgtcccAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1653848/64‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCTATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1781161/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:376444/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:2022202/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:2067140/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:209987/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:212496/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:2154024/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:232551/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:248230/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:251700/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1903513/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:399050/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:444226/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:485727/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:503003/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:540310/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:637627/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:774461/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:906463/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:963468/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:963638/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1411516/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1043598/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1073561/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1088683/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1129626/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1190409/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1218118/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:124261/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1327286/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:138643/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1017722/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1427132/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1449645/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1511008/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1527803/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1681942/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:170082/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1750389/67‑1 (MQ=255) tGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1776389/67‑1 (MQ=255) gACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:303298/66‑1 (MQ=255) gACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:1684607/66‑1 (MQ=255) cccAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGCGGAAGATTa < 1:590230/64‑1 (MQ=255) ccAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGTGGAAGATTATCAGGTGAtt < 1:4553/67‑1 (MQ=255) | TGACCCAATACCAGAGCAAACTGGGTGCGGCGATGGTGATTGTTGCCGCCTGGTGCGTGGAAGATTATCAGGTGATT > minE/2971339‑2971415 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |