| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 5862 = | 60 (0.950) | 33 (0.580) +TAGTG |
4/90 | NT | 36.4% | coding (598/777 nt) | yaaA | conserved hypothetical protein |
| ? | minE | 904500 = | 68 (1.070) | coding (471/843 nt) | ycjP | predicted sugar transporter subunit | |||||
CGATGAGAAGAACGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/5878‑5862‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGTGTTTATGCTGAAAAGC‑TACTTCG > minE/904500‑904525 ||||| acATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGC > 1:318038/3‑41acATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGC > 1:1121767/3‑41acATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGC > 1:3884928/3‑41acATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGC > 1:1703422/3‑41 cATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGCg < 1:2105507/40‑2 cATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGC > 1:1186597/2‑40 cATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGC > 1:476092/2‑40 cATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAA > 1:119210/2‑37 cATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAA > 1:2200125/2‑37 cATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAA > 1:4056036/2‑37 cATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAA > 1:3623465/2‑37 cATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAA > 1:1893855/2‑37 cATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAA > 1:207747/2‑37 ATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGCGTACTTat < 1:1398037/47‑3 ATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAA < 1:2479519/35‑1 ATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAA < 1:1052727/35‑1 TGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAA > 1:3698822/1‑35 TGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAA > 1:4115856/1‑35 TGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAA > 1:106993/1‑35 GAGAAGAACGGCATAGTGCGTGTTTATGCTTAAAt > 1:1665869/1‑34 GAGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGCg > 1:237312/1‑37 GAGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGCg > 1:3816963/1‑37 GAGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGCg > 1:1361002/1‑37 GAGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGCg > 1:449586/1‑37 GAGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGC > 1:1476330/1‑37 AGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGC > 1:3256942/1‑36 AGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGC > 1:1636201/1‑36 AGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGC > 1:3974867/1‑36 AGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGC > 1:119418/1‑36 AGAAGAACGGCATAGTGCGTGTTTATGCTTAAATGC > 1:99047/1‑36 AAGAACGGCATAGTGCGTGTTTATGCTTAAATGCg > 1:1454644/1‑34 AAGAACGGCATAGTGCGTGTTTATGCTTAAATGCg > 1:617631/1‑34 AAGAACGGCATAGTGCGTGTTTATGCTTAAATGCg > 1:806065/1‑34 ||||| CGATGAGAAGAACGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/5878‑5862‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGTGTTTATGCTGAAAAGC‑TACTTCG > minE/904500‑904525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |