| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2808023 = | 87 (1.370) | 3 (0.050) | 3/90 | NT | 3.7% | intergenic (+842/‑265) | tyrB/aphA | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent/acid phosphatase/phosphotransferase, class B, non‑specific |
| ? | minE | 2808050 = | 77 (1.350) | intergenic (+869/‑238) | tyrB/aphA | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent/acid phosphatase/phosphotransferase, class B, non‑specific | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATGTAAGGATACATTAATTTTACGTTTATTATGATGAATCCTCGGCAAATGAGCGAAATTTGATAGAACATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2808096‑2808023‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catttGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATA > minE/2808050‑2808117 GATGTAAGGATACATTAATTTTACGTTTATTATGATGAATCCTCGGCAAATGAGCGAAATTTGATAGAACA > 1:3197318/1‑71GATGTAAGGATACATTAATTTTACGTTTATTATGATGAATCCTCGGCAAATGAGCGAAATTTGATAGAACA > 1:2491058/1‑71 TGTAAGGATACATTAATTTTACGTTTATTATGATGAATCCTCGGCAAATGAGCGAAATTTGATAGAACATT > 1:2548380/1‑71 TACATTAATTTTACGTTTATTATGATGAATCCTCGGCAAATGAGCGAAATTTGATAGAACAT > 1:3106361/1‑62 TTTATTATGATGAATCCTCGGCAAATTAGCGAAATTTGATAGAACATTT < 1:507542/49‑1 TTTATTATGATGAATCCTCGGCAAATGAGCGAAATTTGATAGAACATTT < 1:2084667/49‑1 TTTATTATGATGAATCCTCGGCAAATGAGCGAAATTTGATAGAACATTT < 1:2432310/49‑1 CGGCAAATGAGCGAAATTTGATAGAACATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCC > 1:3638062/1‑71 GCAAATGAGCGAAATTTGATAGAACATTTGCCGAGGATTCATCATAATAAACGTAA < 1:693637/56‑1 AAATGAGCGAAATTTGATAGAACATTTGCCGAGGATTCATCATAATAAACGTAAAA > 1:3807198/1‑56 CATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTA > 1:1869895/1‑71 CATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTA > 1:2966436/1‑71 CATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTA > 1:2196843/1‑71 CATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTA > 1:1805470/1‑71 ATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTA < 1:2874374/70‑1 ATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTA < 1:3159971/70‑1 ATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTA > 1:3383701/1‑70 ATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTA < 1:1974804/70‑1 ATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTA < 1:1970074/70‑1 TTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATA > 1:2735149/1‑71 TTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATA > 1:3951539/1‑71 TTTGCCGAGGATTCATCATAATAAACGTAAAATTAATCTATCAATACATCGACTAATAAACATTTTTTATA > 1:3895122/1‑71 TTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATA > 1:2448052/1‑70 GATGTAAGGATACATTAATTTTACGTTTATTATGATGAATCCTCGGCAAATGAGCGAAATTTGATAGAACATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2808096‑2808023‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catttGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATA > minE/2808050‑2808117 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |