| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 558,918 | T→C | 26.4% | P55P (CCT→CCC) | cmr → | multidrug efflux system protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 558,918 | 0 | T | C | 26.4% | 77.4 / 31.1 | 48 | P55P (CCT→CCC) | cmr | multidrug efflux system protein |
| Reads supporting (aligned to +/- strand): ref base T (18/17); new base C (6/6); total (24/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.92e-01 | |||||||||||
TGATTCAACCCGGTATGTTGGCCGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATC > minE/558857‑558985 | tGATTCAACCCGGTATGTTGGCCGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCCACTTCGAt > 1:2735111/1‑70 (MQ=255) ttGGCCGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTggcggg > 1:2658005/1‑71 (MQ=255) ttGGCCGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCCACTTCGATGACCGCGTATCTggcggg > 1:716542/1‑71 (MQ=255) gCCGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGgcgggcgg < 1:697798/71‑1 (MQ=255) ccGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCTGCTTCGATGACCGCGTATCTGGcgggcggg < 1:246123/71‑1 (MQ=255) cGTGGTGGAACAATATCATGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGa < 1:2672004/71‑1 (MQ=255) cGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCTACtt < 1:3370760/44‑1 (MQ=255) cGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGcgggcggg < 1:843533/70‑1 (MQ=255) cGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGa < 1:1437010/71‑1 (MQ=255) cGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGa < 1:1089076/71‑1 (MQ=255) gtggAACAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGtt > 1:3804030/1‑71 (MQ=255) gtggAACAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGtt > 1:426023/1‑71 (MQ=255) aCAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTa > 1:139644/1‑70 (MQ=255) aCAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTa > 1:2104629/1‑70 (MQ=255) aCAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTa > 1:49162/1‑70 (MQ=255) aCAATATCAGGCGGGCATTGATTGGGTTCCCACTTCGATg < 1:248231/40‑1 (MQ=255) aCAATATCAGGCGGGCATTGATTGGGTTCCCACTTCGATg < 1:1084517/40‑1 (MQ=255) aCAATATCAGGCGGGCATTGATTGGGTTCCCACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTAc < 1:1865211/71‑1 (MQ=255) aCAATATCAGGCGGGCATTGATTGGGTTCCCACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTAc < 1:4220574/71‑1 (MQ=255) aCAATATCAGGCGGGCATTGATTGGGTTCCCACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTAc < 1:3035592/71‑1 (MQ=255) aCAATATCAGGCGGGCATTGATTGGGTTCCAACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTAc < 1:83021/71‑1 (MQ=255) cAATATCAGGCAGGCATTGATTGGGTTCCCACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACa < 1:1525963/71‑1 (MQ=255) atatCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAAt > 1:3554712/1‑71 (MQ=255) atatCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAAt > 1:2240151/1‑71 (MQ=255) tatCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGtt < 1:2205862/62‑1 (MQ=255) tatCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGtt < 1:635993/62‑1 (MQ=255) tatCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGtt < 1:363909/62‑1 (MQ=255) cAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGgct > 1:218803/1‑71 (MQ=255) attgattgGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGcc < 1:1249023/71‑1 (MQ=255) gattgGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACaa < 1:730192/54‑1 (MQ=255) gattgGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAAt > 1:2650712/1‑55 (MQ=255) gattgGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAAt > 1:3327582/1‑55 (MQ=255) gattgGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAAt > 1:2954085/1‑55 (MQ=255) gattgGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAAt > 1:1011956/1‑55 (MQ=255) gattgGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAAt > 1:2212872/1‑55 (MQ=255) gattgGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAAt > 1:1684201/1‑55 (MQ=255) gattgGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCt > 1:2416064/1‑71 (MQ=255) gattgGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCt > 1:2355532/1‑71 (MQ=255) gattgGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCt > 1:1493225/1‑71 (MQ=255) gattgGGTTCCCACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGc > 1:1027880/1‑70 (MQ=255) gggTTCCCACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACaa > 1:3039252/1‑50 (MQ=255) gggTTCCCACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACaa > 1:3696230/1‑50 (MQ=255) gggTTCCCACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACaa > 1:1592367/1‑50 (MQ=255) ttCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACaa < 1:3193188/47‑1 (MQ=255) ttCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACaa < 1:281982/47‑1 (MQ=255) ttCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACaa < 1:162515/47‑1 (MQ=255) ttCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACaa < 1:1346597/47‑1 (MQ=255) ccTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATc < 1:1473518/70‑1 (MQ=255) | TGATTCAACCCGGTATGTTGGCCGTGGTGGAACAATATCAGGCGGGCATTGATTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATC > minE/558857‑558985 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |