| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 868,233 | C→G | 5.9% | intergenic (‑167/‑53) | yciK ← / → sohB | predicted oxoacyl‑(acyl carrier protein) reductase, EmrKY‑TolC system/predicted inner membrane peptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 868,233 | 0 | C | G | 5.9% | 305.2 / 5.0 | 99 | intergenic (‑167/‑53) | yciK/sohB | predicted oxoacyl‑(acyl carrier protein) reductase, EmrKY‑TolC system/predicted inner membrane peptidase |
| Reads supporting (aligned to +/- strand): ref base C (53/40); new base G (4/2); total (57/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 101 total aligned reads displayed.
AACACCGCAAAATGGATACTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTGGAATTGTTGTC > minE/868169‑868299 | aaCACCGCAAAATGGATACTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCt > 1:2229020/1‑71 (MQ=255) cGCAAAATTGATACTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCtgttg > 1:1393703/1‑70 (MQ=255) cGCAAAATGGATACTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCtgttg > 1:1965512/1‑70 (MQ=255) cGCAAAATGGATACTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCtgttg > 1:3878629/1‑70 (MQ=255) tGGATACTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACtgt < 1:291330/71‑1 (MQ=255) tGGATACTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACtgt < 1:3118388/71‑1 (MQ=255) gATACTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACtgt > 1:1718352/1‑69 (MQ=255) aCTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGc > 1:842811/1‑70 (MQ=255) aCTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGc > 1:136409/1‑70 (MQ=255) aCTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGc > 1:232992/1‑70 (MQ=255) aCTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGc > 1:2448861/1‑70 (MQ=255) aCTTTGTCATACTTTAGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGc > 1:2289405/1‑70 (MQ=255) cTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCa < 1:1818614/71‑1 (MQ=255) cTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCa < 1:725439/71‑1 (MQ=255) cTTTGTCATACTTTCGATGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGcc < 1:2616329/70‑1 (MQ=255) ttGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCa > 1:1408852/1‑69 (MQ=255) ttGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCa > 1:3349040/1‑69 (MQ=255) tGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCaaa < 1:2870293/70‑1 (MQ=255) tGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCaaa < 1:2875254/70‑1 (MQ=255) tGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCaaa < 1:3568430/70‑1 (MQ=255) tGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCaaa < 1:933508/70‑1 (MQ=255) tGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAg > 1:2791371/1‑71 (MQ=255) tGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAg > 1:1108596/1‑71 (MQ=255) tGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAg > 1:4043596/1‑71 (MQ=255) tGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAg > 1:4069903/1‑71 (MQ=255) tGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAg > 1:2082414/1‑71 (MQ=255) tGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAg > 1:1501703/1‑71 (MQ=255) tGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAg > 1:1767587/1‑71 (MQ=255) aTACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCgtt < 1:3445691/71‑1 (MQ=255) aTACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCgtt < 1:3039029/71‑1 (MQ=255) tACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCgtt < 1:3787584/70‑1 (MQ=255) aCTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCgttgt > 1:1426594/1‑71 (MQ=255) aCTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCgttgt > 1:154154/1‑71 (MQ=255) aCTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCgttgt > 1:2932839/1‑71 (MQ=255) aCTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCgttgt > 1:4246095/1‑71 (MQ=255) aCTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCgttgt > 1:903925/1‑71 (MQ=255) cTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCgt > 1:472774/1‑67 (MQ=255) tttCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTaaa > 1:4161604/1‑50 (MQ=255) tttCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTaaa > 1:2163945/1‑50 (MQ=255) tCGCTGCAATAACATCTCTGCGAGACGGCTTAACa > 1:3361956/1‑35 (MQ=255) tCGCTGCAATAACATCTCTGCGAGACGGCTTAACa > 1:3313045/1‑35 (MQ=255) tCGCTGCAATAACATCTCTGCGAGACGGCTTAACa > 1:4048171/1‑35 (MQ=255) tCGCTGCAATAACATCTCTGCGAGACGGCTTAACa > 1:763659/1‑35 (MQ=255) tCGCTGCAATAACATCTCTGCGAGACGGCTTAACa > 1:295961/1‑35 (MQ=255) tCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGttt < 1:2266245/69‑1 (MQ=255) tCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGttt < 1:3912147/69‑1 (MQ=255) tCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGttt < 1:3755762/69‑1 (MQ=255) tCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGttt < 1:1675766/69‑1 (MQ=255) tCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGttt < 1:3819271/69‑1 (MQ=255) tCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTaa > 1:3813486/1‑71 (MQ=255) tCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTaa > 1:1181903/1‑71 (MQ=255) tCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTaa > 1:3845697/1‑71 (MQ=255) tCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTaa > 1:1271380/1‑71 (MQ=255) gCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAAcc < 1:266982/71‑1 (MQ=255) gCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAAcc < 1:2613337/71‑1 (MQ=255) cTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAg < 1:753080/58‑1 (MQ=255) cTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAg < 1:2362542/58‑1 (MQ=255) gCAATAACATCTCTGCGAGCCGGCTTAAGATGCCTGTTGTaaa > 1:906580/1‑43 (MQ=255) gCAATAACATCTCTGCGAGACGGCTTAAGATGCCTGTTGTaaa > 1:3526004/1‑43 (MQ=255) gCAATAACATCTCTGCGAGACGGCTTAAGATGCCTGTTGTaaa > 1:2322689/1‑43 (MQ=255) gaaTAACATCTCTGCGAGACGGCTTAAGATGCCTGTTGTaaa > 1:427590/2‑42 (MQ=255) cAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAAccta < 1:3748980/69‑3 (MQ=255) cAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCaa < 1:3254166/69‑1 (MQ=255) cAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAgg > 1:1103332/1‑71 (MQ=255) cAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAgg > 1:4084207/1‑71 (MQ=255) cAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAg < 1:1892538/70‑1 (MQ=255) cAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAg < 1:4209703/70‑1 (MQ=255) cAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAg < 1:2499634/70‑1 (MQ=255) tAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTgg > 1:829740/1‑71 (MQ=255) aCATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTggg > 1:1419181/1‑70 (MQ=255) aCATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTggg < 1:2464916/70‑1 (MQ=255) aCATCTCT‑‑GAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGAc > 1:2361522/1‑71 (MQ=255) aTCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGc < 1:737297/49‑1 (MQ=255) tctGCTAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAAcc < 1:2463679/57‑1 (MQ=255) tGCGAGACGGCTTAAGATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTc < 1:1758794/68‑1 (MQ=255) tGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTg > 1:415831/1‑71 (MQ=255) tGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTg > 1:2167849/1‑71 (MQ=255) tGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTg > 1:176948/1‑71 (MQ=255) cGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTgg > 1:1392939/1‑70 (MQ=255) cGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTgg > 1:1976484/1‑70 (MQ=255) cGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTgg < 1:1897443/70‑1 (MQ=255) cGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTgg > 1:1568356/1‑70 (MQ=255) cGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTgg > 1:3459779/1‑70 (MQ=255) cGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTgg < 1:440748/70‑1 (MQ=255) cGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTGGa < 1:1604925/71‑1 (MQ=255) cGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTGGa < 1:2848248/71‑1 (MQ=255) cGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTGGa < 1:754090/71‑1 (MQ=255) cGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTGGa < 1:2808764/71‑1 (MQ=255) gaCGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTGGAAtt < 1:1648717/71‑1 (MQ=255) ggCTTAAGATGCCTGTTGTAAACTGTGAGCCAAAGCgttgt < 1:1902117/41‑1 (MQ=255) ggCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTGGAAttgtt > 1:817663/1‑71 (MQ=255) ggCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTGGAAttgtt > 1:931333/1‑71 (MQ=255) ggCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTGGAAttgtt > 1:3302076/1‑71 (MQ=255) cTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTGGAATtgttgt > 1:3656368/1‑71 (MQ=255) aaCATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGttt < 1:2173745/38‑1 (MQ=255) aaCATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGttt < 1:2076199/38‑1 (MQ=255) aaCATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGttt < 1:1736229/38‑1 (MQ=255) aaCATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTGGAATTGTTGTc < 1:2125862/69‑1 (MQ=255) cATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTaa > 1:1889435/1‑38 (MQ=255) cATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTaa > 1:1829831/1‑38 (MQ=255) | AACACCGCAAAATGGATACTTTGTCATACTTTCGCTGCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCGTGGAATTGTTGTC > minE/868169‑868299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |