| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,063,788 | T→A | 11.6% | intergenic (+138/+24) | sodB → / ← ydhP | superoxide dismutase, Fe/predicted transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,063,788 | 0 | T | A | 11.6% | 192.1 / 18.8 | 78 | intergenic (+138/+24) | sodB/ydhP | superoxide dismutase, Fe/predicted transporter |
| Reads supporting (aligned to +/- strand): ref base T (26/42); new base A (3/6); total (30/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.15e-01 | |||||||||||
AGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAGGTTGTTTTCTGGCTGA > minE/1063718‑1063856 | aGGTCGGATAAGGAACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGt > 1:2617983/1‑71 (MQ=255) ggTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGtt < 1:4126829/71‑1 (MQ=255) tCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTAt > 1:477898/1‑71 (MQ=255) cGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGAAACGCAGAAGGTTATc > 1:512098/1‑71 (MQ=255) ggATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATcc < 1:1608416/71‑1 (MQ=255) ggATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATcc < 1:3646879/71‑1 (MQ=255) gATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCt > 1:2234043/1‑71 (MQ=255) aTAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCtt > 1:887475/1‑71 (MQ=255) aTAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCtt > 1:1967622/1‑71 (MQ=255) tAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTc > 1:2754802/1‑71 (MQ=255) aaGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCtt > 1:2108447/1‑69 (MQ=255) aaGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCt > 1:2698783/1‑71 (MQ=255) cTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTACCCTTCTGCGttt < 1:1647735/71‑1 (MQ=255) cgccgcATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGttttt > 1:2115702/1‑71 (MQ=255) cgccgcATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGttttt > 1:3606099/1‑71 (MQ=255) cgccgcATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGttttt > 1:653407/1‑71 (MQ=255) cgccgcATCCGGCAAGATAAATCGCACGTT‑TCAGCAACTGTAACGCAGAAGGCTATCCTTCTGCGTTTTTg > 1:2125879/1‑71 (MQ=39) gccgcATCCGGAAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTg > 1:3421303/1‑71 (MQ=255) gcATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGttt < 1:170757/71‑1 (MQ=255) aTCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTaa < 1:4003008/71‑1 (MQ=255) cGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAAtt < 1:592307/70‑1 (MQ=255) cGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAAt > 1:1566966/1‑69 (MQ=255) cAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGATAACCtt < 1:520621/49‑1 (MQ=38) cAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGATAACCtt < 1:665775/49‑1 (MQ=38) cAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGATAACCtt < 1:950027/49‑1 (MQ=38) cAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGATAACCtt < 1:1010487/49‑1 (MQ=38) cAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGATAACCtt < 1:1070316/49‑1 (MQ=38) aGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGtt < 1:2177105/60‑1 (MQ=255) aGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGtt < 1:1482440/60‑1 (MQ=255) aGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGtt < 1:423835/60‑1 (MQ=255) aGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGATAACCtt < 1:3376079/47‑1 (MQ=37) aGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGATAACCTTCt > 1:2332126/1‑49 (MQ=37) aGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGATAACCTTCt > 1:1750660/1‑49 (MQ=37) aGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGATAACCTTCt > 1:1522982/1‑49 (MQ=37) gATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGt < 1:486713/70‑1 (MQ=255) aaaTCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAg > 1:1477351/1‑70 (MQ=255) aaTCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTTTCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCa < 1:1941930/71‑1 (MQ=255) aaTCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCa < 1:2525638/71‑1 (MQ=255) tCGCACGTTTTCAGCAACTGTAACGCAGAAGGTTa < 1:590531/35‑1 (MQ=255) tCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:1596328/35‑1 (MQ=255) tCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:1591212/35‑1 (MQ=255) tCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:3149232/35‑1 (MQ=255) tCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:3900919/35‑1 (MQ=255) tCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:3659482/35‑1 (MQ=255) tCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:2888532/35‑1 (MQ=255) tCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:271323/35‑1 (MQ=255) tCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:570798/35‑1 (MQ=255) tCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:2582395/35‑1 (MQ=255) tCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:2575252/35‑1 (MQ=255) tCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:1990061/35‑1 (MQ=255) cGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGttt < 1:1006311/47‑1 (MQ=255) cGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGc < 1:3913394/67‑1 (MQ=255) cGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACg > 1:2152988/1‑71 (MQ=255) cACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCa < 1:2386859/71‑1 (MQ=255) cACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCa < 1:4044740/71‑1 (MQ=255) cACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCa < 1:427142/71‑1 (MQ=255) aCGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGtt < 1:255517/43‑1 (MQ=255) gTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCa < 1:1218940/68‑1 (MQ=255) tGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTg > 1:2937436/1‑71 (MQ=255) tGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTg > 1:3064568/1‑71 (MQ=255) gTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGt > 1:1863353/1‑71 (MQ=255) gTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGt > 1:3915736/1‑71 (MQ=255) tCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGtt > 1:3754742/1‑71 (MQ=255) aGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTc < 1:2713146/71‑1 (MQ=255) cAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAg > 1:4139487/1‑71 (MQ=255) cAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAg > 1:2398013/1‑71 (MQ=255) aaCTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCaa > 1:1795687/1‑55 (MQ=255) aaCTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCa > 1:3685501/1‑54 (MQ=255) gTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAg > 1:630544/1‑66 (MQ=255) gTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAg > 1:2959892/1‑66 (MQ=255) tAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAGgttgtt < 1:1852419/71‑1 (MQ=255) tAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAGgttgtt < 1:1908488/71‑1 (MQ=255) tAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAGgttgtt < 1:1620879/71‑1 (MQ=255) tAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAGgttg < 1:545053/69‑1 (MQ=255) tAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAGgttg < 1:4253078/69‑1 (MQ=255) tAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAGgttg < 1:1629615/69‑1 (MQ=255) tAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAGgttg < 1:3893902/69‑1 (MQ=255) aaCGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAGgttgtt < 1:820361/70‑1 (MQ=255) aaGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAGGTTGTTTTCTGGCt < 1:128056/71‑1 (MQ=255) ggTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAGGTTGTTTTCTGGCTGa < 1:379993/71‑1 (MQ=255) | AGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCAAACTGTTTCAGGTTGTTTTCTGGCTGA > minE/1063718‑1063856 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |