| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 69 (1.450) | 42/102 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGG > W3110S.gb/274304‑274442 | atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCg < 1:3859764/71‑1 (MQ=31)atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCg < 1:4268083/71‑1 (MQ=31) atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAg > 1:583943/1‑71 (MQ=35) atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAg > 1:3810715/1‑71 (MQ=35) atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAg > 1:1424274/1‑71 (MQ=35) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:2705268/71‑1 (MQ=255) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:4283140/71‑1 (MQ=255) tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:1036847/67‑1 (MQ=255) tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGc > 1:1298609/1‑71 (MQ=255) cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt > 1:2665179/1‑66 (MQ=255) cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGc < 1:379163/70‑1 (MQ=255) tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggc > 1:1435705/1‑71 (MQ=255) gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcgg > 1:3858422/1‑71 (MQ=255) cAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGGGCTGGCGGCCCt > 1:1352659/1‑71 (MQ=255) cAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCt > 1:3016439/1‑71 (MQ=255) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATg < 1:2223208/56‑1 (MQ=255) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATg < 1:2353871/56‑1 (MQ=255) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttt > 1:3646434/1‑71 (MQ=255) aTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGa < 1:2516736/56‑1 (MQ=255) aTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCtt < 1:4133796/69‑1 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttttt < 1:586539/71‑1 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCtttt < 1:1100079/70‑1 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCtttt > 1:2693949/1‑70 (MQ=255) gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt > 1:489155/1‑52 (MQ=255) aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:2360574/48‑1 (MQ=255) aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTg < 1:3756410/70‑1 (MQ=255) aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTg > 1:3350500/1‑70 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:737860/47‑1 (MQ=255) aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCC‑TTTTGTATCt < 1:777265/71‑1 (MQ=255) aCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCt < 1:4259174/71‑1 (MQ=255) aTGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATg > 1:1902212/1‑46 (MQ=255) aTGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCt < 1:3218323/69‑1 (MQ=255) aTGATATCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGa > 1:2968794/1‑71 (MQ=255) aTGAACTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCAGGCGGcc > 1:1833009/1‑57 (MQ=25) tGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTa > 1:312996/1‑65 (MQ=255) tGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCt < 1:2304286/68‑1 (MQ=255) tGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGAGTTATGAGCTGGCGGCCCTTTTTGTATCt < 1:2663968/68‑1 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTa > 1:983864/1‑38 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt > 1:2118916/1‑39 (MQ=255) cATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTaa > 1:2933562/1‑71 (MQ=255) atatCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGAttatta < 1:4398186/69‑1 (MQ=255) atatCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt < 1:172841/71‑1 (MQ=255) atatCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt < 1:1558085/71‑1 (MQ=255) atatCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTAGCGGCCCTTTTTGTATCTGattatt < 1:141664/68‑1 (MQ=255) atatCAGGGACTTGTTCGCACCTTCC‑GAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGAttatta < 1:1063845/68‑1 (MQ=255) atCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATcc > 1:2409231/1‑71 (MQ=255) aCTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTaa > 1:1723000/1‑61 (MQ=255) ttGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCt > 1:1784714/1‑40 (MQ=255) ttGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCt > 1:1238867/1‑40 (MQ=255) tGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTa > 1:295294/1‑71 (MQ=255) tGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTa > 1:4424422/1‑71 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTa > 1:2526792/1‑70 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTa < 1:721027/70‑1 (MQ=255) ttCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTAtt < 1:375676/71‑1 (MQ=255) ttCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTAtt < 1:1885534/71‑1 (MQ=255) cTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGat < 1:113428/43‑1 (MQ=255) tCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGat > 1:4239437/1‑41 (MQ=255) cGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCgg < 1:2727752/70‑1 (MQ=255) | ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGG > W3110S.gb/274304‑274442 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |