| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 45 (0.950) | 61 (1.370) +TCA |
42/96 | NT | 74.3% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 245 total aligned reads displayed.
GTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAA > W3110S.gb/314384‑314522 | tttGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctct < 1:1639405/71‑1 (MQ=255) ggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTAcc < 1:4050844‑M1/7‑1 (MQ=255) aaGATAAGCGCTAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAg > 1:3089386/1‑71 (MQ=255) aGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGc < 1:1292545/71‑1 (MQ=255) tAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctct < 1:2342768/60‑1 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAAt > 1:1024225‑M1/57‑70 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAAt > 1:3177078‑M1/57‑70 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATa > 1:2712293‑M1/57‑71 (MQ=255) cgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAAt > 1:2589755‑M1/56‑69 (MQ=255) cagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCaa > 1:2221839‑M1/52‑64 (MQ=255) cagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGt < 1:3253124‑M1/17‑1 (MQ=255) cagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGa > 1:3540282‑M1/52‑71 (MQ=255) taccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGac > 1:3990415‑M1/50‑70 (MQ=255) agatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGacac > 1:3702922‑M1/49‑71 (MQ=255) agatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGacac > 1:2897638‑M1/49‑71 (MQ=255) gatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACAcg > 1:4093579‑M1/48‑71 (MQ=255) tttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTAcc > 1:845134‑M1/46‑52 (MQ=255) cccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCt < 1:3958428/71‑1 (MQ=255) taaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATa < 1:1375324‑M1/15‑1 (MQ=255) taaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCt > 1:1034557‑M1/42‑70 (MQ=255) gCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAg > 1:3465623/1‑71 (MQ=255) accatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 1:2782260‑M1/32‑1 (MQ=255) ctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:1707465‑M1/39‑71 (MQ=255) ctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:721801‑M1/39‑71 (MQ=255) ccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:2433309‑M1/39‑71 (MQ=255) tGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGa < 1:1770709/56‑1 (MQ=255) cttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg < 1:2283644‑M1/36‑1 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTATTACCCAGCAATAGTGGACACGCGGCTAAGTGa > 1:1166027/1‑69 (MQ=255) gttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGacac < 1:3557523‑M1/23‑1 (MQ=255) aTTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCt < 1:1107375/61‑1 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:4431856/1‑71 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:1489158/69‑1 (MQ=255) cacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAg < 1:1205657‑M1/16‑1 (MQ=255) gatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGaca > 1:1932990‑M1/28‑49 (MQ=255) atagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc > 1:3640064‑M1/27‑71 (MQ=255) tagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca > 1:4296797‑M1/26‑71 (MQ=255) ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:807764/69‑1 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcag < 1:381988‑M1/47‑1 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:3881480‑M1/46‑1 (MQ=255) agcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:1794718‑M1/25‑68 (MQ=255) cagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:4190188‑M1/23‑70 (MQ=255) cagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:1661462‑M1/48‑1 (MQ=255) gagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:3394163‑M1/21‑71 (MQ=255) gagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca > 1:250644‑M1/21‑70 (MQ=255) gTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:3346630/1‑68 (MQ=255) aagtgtacgaacactgaTCTTACCCAGCAATAGTGGCCACGCGGCTaa < 1:4321003‑M1/31‑1 (MQ=255) aagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:1820980‑M1/18‑57 (MQ=255) aagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg < 1:877865‑M1/54‑1 (MQ=255) gcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg > 1:2677208‑M1/16‑71 (MQ=255) tataCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc > 1:3019136/1‑55 (MQ=255) tataCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa > 1:2352697/1‑71 (MQ=255) ccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:1245950‑M1/14‑71 (MQ=255) ataCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg > 1:1956352/1‑69 (MQ=255) cgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt > 1:1526869‑M1/13‑71 (MQ=255) cgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:4137844‑M1/11‑58 (MQ=255) cgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:4143002‑M1/11‑58 (MQ=255) cgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:4366602‑M1/61‑1 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca > 1:572372/1‑56 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:661687/1‑71 (MQ=255) gaacactgaTCTTACCCAGCAATAGTGGACACGCGGCt > 1:2845421‑M1/10‑38 (MQ=255) aacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 1:3951362‑M1/63‑1 (MQ=255) acactgaTCTTACCCAGCAATAGTGGACACGCGGCTaa < 1:2658967‑M1/31‑1 (MQ=255) acactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:840662‑M1/64‑1 (MQ=255) acttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:1003959‑M1/64‑1 (MQ=255) acttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:1196045‑M1/64‑1 (MQ=255) acttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:3376979‑M1/64‑1 (MQ=255) acttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:2943436‑M1/64‑1 (MQ=255) acttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:2579887‑M1/64‑1 (MQ=255) acttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt > 1:2260137‑M1/7‑70 (MQ=255) acttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTAAGTCAGAGGTGACTCACAt < 1:2303539‑M1/64‑1 (MQ=255) gTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa > 1:2623464/1‑71 (MQ=38) gTGCCTCTTACACAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg > 1:2444703/1‑59 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:139898‑M1/46‑1 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:486674‑M1/55‑1 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:544978‑M1/66‑1 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:550045‑M1/66‑1 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa > 1:897040‑M1/6‑71 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 1:3160788‑M1/32‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:1383931‑M1/5‑55 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca > 1:1076012‑M1/5‑67 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 1:3998542‑M1/32‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:2124207‑M1/4‑43 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:3140928‑M1/4‑41 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:4383895‑M1/48‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:755434‑M1/48‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:1461186‑M1/59‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:174957‑M1/67‑1 (MQ=255) agaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:359284‑M1/4‑42 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:34421‑M1/40‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc < 1:1434849‑M1/60‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:2200142‑M1/67‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa < 1:1180295‑M1/35‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg < 1:3417126‑M1/54‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:2970715‑M1/57‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 1:3189207‑M1/2‑68 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:1993536‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:2471779‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:3241948‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:3666764‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:3064205‑M1/2‑69 (MQ=255) | GTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAA > W3110S.gb/314384‑314522 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |