| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 64 (1.350) | 40/102 | NT | 98.5% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 1 (0.020) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGT > W3110S.gb/315639‑315775 | cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAt > 1:3663981/1‑70 (MQ=31)cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATa < 1:3588260/71‑1 (MQ=32)cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATa < 1:3764023/71‑1 (MQ=32)cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGCATCATa < 1:502/71‑1 (MQ=17) tCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATaa < 1:4185405/67‑1 (MQ=35) cGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAt > 1:3619535/1‑63 (MQ=31) cGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAt > 1:1729921/1‑63 (MQ=31) cGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCt > 1:3628729/1‑71 (MQ=255) cGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCt < 1:3869174/71‑1 (MQ=255) aTTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCg > 1:3284822/1‑71 (MQ=255) aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTc < 1:2943352/71‑1 (MQ=255) aaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTc > 1:3850617/1‑70 (MQ=255) aaGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGt > 1:3511306/1‑65 (MQ=255) aGACCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGt > 1:3604450/1‑61 (MQ=255) aGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCt < 1:4261569/53‑1 (MQ=255) aGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCActct > 1:355417/1‑71 (MQ=255) gAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGt > 1:2811258/1‑63 (MQ=255) tCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTgg > 1:1100447/1‑70 (MQ=255) cTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCtt < 1:1127801/63‑1 (MQ=255) ggCCTGTGTCCATATTACGTGTGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAg < 1:2353726/71‑1 (MQ=255) ggCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCa > 1:367933/1‑54 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTg > 1:1611416/1‑49 (MQ=255) ccTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa < 1:2996856/71‑1 (MQ=255) cTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa > 1:3181521/1‑70 (MQ=255) cTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa > 1:1846163/1‑70 (MQ=255) gtgtCCATATTACGTGGGTAGGATCATAAAGTCCTc < 1:4283744/36‑1 (MQ=255) tCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTca < 1:111523/71‑1 (MQ=255) cATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcaca < 1:2762781/71‑1 (MQ=255) tatTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCtt < 1:3351283/47‑1 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCa > 1:25163/1‑40 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATg < 1:4316426/53‑1 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAcc > 1:3541807/1‑71 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAcc > 1:1473022/1‑71 (MQ=255) ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAcc > 1:1467521/1‑71 (MQ=255) tACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCatat > 1:3457463/1‑61 (MQ=255) aCGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTca < 1:3569058/63‑1 (MQ=255) ggATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCaa < 1:2834111/70‑1 (MQ=255) aTCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGc > 1:3484647/1‑45 (MQ=255) tCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTgg < 1:2820421/35‑1 (MQ=255) tCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCGGCAAAAGt > 1:3835364/1‑71 (MQ=255) tCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCaa < 1:3969652/67‑1 (MQ=255) aTAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTca > 1:2695239/1‑49 (MQ=255) | CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAGT > W3110S.gb/315639‑315775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |