| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 44 (0.930) | 178 (5.200) +AGGGTCCCTAAGTC |
57/74 | NT | 90.8% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 6 (0.130) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
Only 100 of 234 total aligned reads displayed.
TCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGG > W3110S.gb/3464810‑3464932 | gttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtct > 1:60636‑M2/70‑70 (MQ=255) ttccgtgccggttgtgaagaaaaagtgactgatgtagccgtcaagttgtcataaagggtccctaagtcTaa < 1:399516‑M2/3‑1 (MQ=255) ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaa < 1:1519960‑M2/3‑1 (MQ=255) ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:1004394‑M2/67‑71 (MQ=255) ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:2488521‑M2/67‑71 (MQ=255) ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:1900065‑M2/67‑71 (MQ=255) ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaa > 1:1929679‑M2/67‑70 (MQ=255) ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagcgtccctaagtcTaaa < 1:4409982‑M2/4‑1 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:1285318‑M2/7‑1 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:4119775‑M2/7‑1 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:4076274‑M2/7‑1 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:3885677‑M2/7‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:1348828‑M2/8‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:1135242‑M2/8‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:52868‑M2/8‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:2435185‑M2/8‑1 (MQ=255) gccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa > 1:1573792‑M2/63‑70 (MQ=255) ttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcatagagggtccctaagtcTAAAACGAAAGGcc > 1:2601958‑M2/58‑71 (MQ=255) ttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc < 1:2314704‑M2/14‑1 (MQ=255) gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtctat < 1:1201523‑M2/3‑2 (MQ=255) gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:446736‑M2/8‑1 (MQ=255) gaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa > 1:3066911‑M2/54‑55 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:2860174‑M2/7‑1 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGt > 1:650096‑M2/53‑70 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTc > 1:7294‑M2/53‑71 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt > 1:4129957‑M2/52‑71 (MQ=255) gaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt < 1:2058111‑M2/21‑1 (MQ=255) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:1428770‑M2/23‑1 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:3307339‑M2/48‑52 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaaa > 1:2462723‑M2/48‑57 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGTCCCAGTCTTTc > 1:2813630‑M2/48‑70 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:2917616‑M2/48‑70 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:1593811‑M2/48‑70 (MQ=255) gtgaatgatgtagccgtcaagttgtcataaagtgtccctaagtcTAAAACg < 1:376441‑M2/7‑1 (MQ=255) tgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTg < 1:3641397‑M2/28‑1 (MQ=255) tgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTg < 1:3909506‑M2/28‑1 (MQ=255) gaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAAc < 1:3802630‑M2/6‑1 (MQ=255) gaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa > 1:4381314‑M2/43‑51 (MQ=255) gaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:686342‑M2/8‑1 (MQ=255) gaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACt > 1:1740022‑M2/43‑69 (MQ=255) aatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:3112121‑M2/29‑1 (MQ=255) aatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:1425861‑M2/29‑1 (MQ=255) aatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:1072308‑M2/29‑1 (MQ=255) aatgatgtagacgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:489202‑M2/29‑1 (MQ=255) atgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc < 1:3500959‑M2/31‑1 (MQ=255) tgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:2982142‑M2/8‑1 (MQ=255) tgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGcc > 1:3118608‑M2/40‑71 (MQ=255) gatgtagccgtcaagttgtcataaagggtccctaagtcTaa < 1:927098‑M2/3‑1 (MQ=255) gatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGcc > 1:3156020‑M2/39‑70 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaaa > 1:181325‑M2/38‑47 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:1490274‑M2/8‑1 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGAc > 1:1641140‑M2/38‑63 (MQ=255) tgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt < 1:3259258‑M2/34‑1 (MQ=255) tagccgtcaagttgtcataaagggtccctaagtcTaaa < 1:74240‑M2/4‑1 (MQ=255) tagccgtcaagttgtcataaagggtccctaagtcTAAAACGaaa > 1:2258864‑M2/35‑44 (MQ=255) tagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACt > 1:525474‑M2/35‑61 (MQ=255) tagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCg > 1:308413‑M2/35‑71 (MQ=255) agccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt > 1:1797133‑M2/34‑71 (MQ=255) gccgtcaagttgtcataaagggtccctaagtcTAAAACGaaa > 1:3975252‑M2/33‑42 (MQ=255) gccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:1036494‑M2/38‑1 (MQ=255) cgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtttt < 1:2366764‑M2/41‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACg < 1:1105874‑M2/7‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACGa < 1:3290042‑M2/8‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACGa < 1:4303217‑M2/8‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGAc > 1:1545734‑M2/29‑54 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt < 1:2306737‑M2/34‑1 (MQ=255) caagttgtcataaagggtccctaagtcTAAAACGa < 1:4343946‑M2/8‑1 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaaa > 1:2738837‑M2/27‑36 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:2720490‑M2/27‑35 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt > 1:3776904‑M2/27‑46 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg > 1:3537582‑M2/27‑50 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:1634980‑M2/30‑1 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt > 1:1667098‑M2/27‑71 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt > 1:2999292‑M2/27‑71 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt > 1:3946561‑M2/27‑71 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt > 1:2107204‑M2/27‑71 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAtt > 1:2038922‑M2/27‑70 (MQ=255) agttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTg < 1:125483‑M2/46‑1 (MQ=255) agttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTg < 1:2784378‑M2/46‑1 (MQ=255) gttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt < 1:3185743‑M2/20‑1 (MQ=255) gttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGa > 1:2675132‑M2/25‑71 (MQ=255) gttgtcataaagggtacctaagtcTAAAACGAAAGGCACAGTCTTTc > 1:4243340‑M2/25‑47 (MQ=255) ttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt < 1:3554039‑M2/21‑1 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGa > 1:4055434‑M2/23‑47 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTtgacc > 1:4011591‑M2/23‑69 (MQ=255) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:201149‑M2/30‑1 (MQ=255) cataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:3870772‑M2/50‑4 (MQ=255) cataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:251872‑M2/50‑4 (MQ=255) ataaagggtccctaagtcTAAACCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGttt < 1:3421399‑M2/40‑1 (MQ=255) ataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:1991602‑M2/19‑41 (MQ=255) ataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTa < 1:4195425‑M2/42‑1 (MQ=255) taaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 1:3408833‑M2/33‑1 (MQ=255) aagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTa > 1:3478629‑M2/16‑57 (MQ=255) aagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt < 1:3704375‑M2/43‑1 (MQ=255) gggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc < 1:832073‑M2/31‑1 (MQ=255) gggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc < 1:1020293‑M2/31‑1 (MQ=255) ctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt < 1:3381807‑M2/34‑1 (MQ=255) taagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGcc > 1:1590458‑M2/7‑38 (MQ=255) acaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgg > 1:809087/1‑59 (MQ=35) tAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt < 1:2147242/43‑1 (MQ=38) | TCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGG > W3110S.gb/3464810‑3464932 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |